PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024775.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 334aa MW: 37496.9 Da PI: 6.7929

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024775.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ede+l+d++k+ G ++Wk+ ++ g++R++k+c++rw +yl CCG024775.1 14 KGPWTPDEDEKLIDYIKRNGHENWKALPELAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53	8.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ +v+++ lG++ W++Ia++++ gRt++++k++w+++ CCG024775.1 67 RGKFSEEEERVIVNLHSVLGNK-WSRIASHLP-GRTDNEIKNFWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.946	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.91E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	8.6E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-17	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.26E-11	16	61	No hit	No description
PROSITE profile	PS51294	27.139	62	116	IPR017930	Myb domain
SMART	SM00717	8.3E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-15	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-26	69	116	IPR009057	Homeodomain-like
CDD	cd00167	1.18E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MVRSPCSHAS ALKKGPWTPD EDEKLIDYIK RNGHENWKAL PELAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEERVIVN LHSVLGNKWS RIASHLPGRT DNEIKNFWNT HIRKKLLQMG 120 IDPNTHKPRT DLSHFLNLSQ LLGAAQFGNI ASPWNNFLKL QAEATQLANI QLLRNLLQMM 180 NTNTLTNIES NSLSGSQNPH QFRGLVNGTS ISNTNEPTPT SQDLVNPPVT PQVHNDFQAI 240 SNLWASCEDG FGPEGVNINS DTLSSSYGIQ TEQNPLPALV SASTSPVTSI VYQKERKGDP 300 SNYSTGTPTS TIFEAWEKLI DDENYSSYWN DILE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-30	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028156.1	0.0	PREDICTED: transcription factor MYB39-like isoform X2
Swissprot	Q9S9Z2	5e-83	MYB93_ARATH; Transcription factor MYB93
TrEMBL	B9GZ98	0.0	B9GZ98_POPTR; Uncharacterized protein
STRING	POPTR_0003s09300.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF402	34	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-86	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]