PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024759.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 794aa    MW: 87903.7 Da    PI: 5.1279
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024759.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox33.95.3e-1187129143
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43 
                  +++ +++t+ q++e+e++F+++++p+ ++r +L+++lgL+ rq
  CCG024759.1  87 KKRYHRHTAAQIQEMEAMFKECPHPDDKQRMRLSQELGLKPRQ 129
                  688999**********************************999 PP
2START158.93.8e-502724971206
                  HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                  ela++ ++elvk+  a+ep+W +    eng+evl  +e ++               ++ea r+++vv+m++++lv  +ld + +W e ++    +a+t
  CCG024759.1 272 ELALSSMDELVKMCHANEPLWIRNI--ENGKEVLNLEEHGRMfpwpsnlkqnsseTRTEATRDCAVVIMNSVTLVDAFLDAN-KWMELFPsivaRAKT 366
                  578999*******************..**********99999****************************************.******99999**** PP

                  EEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
        START  82 levissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                  ++vi++g     g l+lm+aelq+lsplvp R+ +f+R++ q  ++g+w+ivd  +d   ++  ++s+   +++pSg++i++++ng+s+vtw+eh++ 
  CCG024759.1 367 VQVITPGisgasGCLHLMYAELQVLSPLVPtRETYFLRFCHQnVEEGTWAIVDFPLDRLHDNI-QPSFPLYKRHPSGCVIQDMPNGYSRVTWIEHAEI 463
                  ******************************************99*****************98.89999999************************** PP

                  -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                  +++ +h+++ + v sg+a+ga +w+  lqrqce+
  CCG024759.1 464 EEKPVHQIFSQYVYSGMAFGAHRWLTVLQRQCER 497
                  ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-1372129IPR009057Homeodomain-like
SuperFamilySSF466893.38E-1073131IPR009057Homeodomain-like
SMARTSM003893.7E-485139IPR001356Homeobox domain
CDDcd000861.16E-987129No hitNo description
PfamPF000461.6E-887129IPR001356Homeobox domain
PROSITE profilePS5084842.858263500IPR002913START domain
SuperFamilySSF559614.67E-31265499No hitNo description
CDDcd088751.08E-110267496No hitNo description
SMARTSM002341.3E-28272497IPR002913START domain
PfamPF018521.3E-42272497IPR002913START domain
SuperFamilySSF559615.49E-18515755No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MFGDCQVMSS MGGSVVSSDN LYSSPIGNPN FSFMSSMPFH TFSPVIPKEE NGLVMRGKEE  60
MESGSGSEQL EDRSGNEQES SEQPPKKKRY HRHTAAQIQE MEAMFKECPH PDDKQRMRLS  120
QELGLKPRQA QQDRSDNLIL RAENESLKND NYRLQAELRN LICPNCGGQA MLGAIPFEEL  180
RLENARLRDE LERVCCITSR YGGRQIHSMV PVPSFVPPSL DLDMNMYSRP FPEYLGTCTD  240
MMPMPVPLLE EPSSFPEAGV VLMEEGKGLA MELALSSMDE LVKMCHANEP LWIRNIENGK  300
EVLNLEEHGR MFPWPSNLKQ NSSETRTEAT RDCAVVIMNS VTLVDAFLDA NKWMELFPSI  360
VARAKTVQVI TPGISGASGC LHLMYAELQV LSPLVPTRET YFLRFCHQNV EEGTWAIVDF  420
PLDRLHDNIQ PSFPLYKRHP SGCVIQDMPN GYSRVTWIEH AEIEEKPVHQ IFSQYVYSGM  480
AFGAHRWLTV LQRQCERVAS LMARNISDLG VIPSPEARKN MMRLAQRMIR IFSLNISSSS  540
GQSWTGLSDS YDDTVRITTR KITEPGQPNG VILSAVSTTW LPYPHYQVFD LLRDEHRRSQ  600
LEVLSNGNAL HEVAHIANGS HPGNCISLLR INVASNSSQH VELMLQECCT DQSGSLVVYT  660
TVDVESIQLA MSGEDPSCIP LLPLGFVIVP VESSSAVSEG NSMPSNSEDG NGHNNSGCLL  720
TVGLQVLAST IPSAKLNLSS VTAINNHLCN TVNQITAALS SSSTTTITTT SSCLDNGNAV  780
GSCNIEPTAA LKQV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU1291823e-94GU129182.1 Populus deltoides transcription factor HEX (OCLHD) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303433.20.0homeobox-leucine zipper protein HDG5
RefseqXP_006385675.20.0homeobox-leucine zipper protein HDG5
RefseqXP_024452822.10.0homeobox-leucine zipper protein HDG5
RefseqXP_024452823.10.0homeobox-leucine zipper protein HDG5
RefseqXP_024452824.10.0homeobox-leucine zipper protein HDG5
RefseqXP_024452825.10.0homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLB9GZI90.0B9GZI9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]