PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024667.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family BES1
Protein Properties Length: 675aa    MW: 76416.8 Da    PI: 6.3949
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024667.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822142.73.4e-44731972134
       DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslk 99 
                  g+g+++++kE+E++k+RER+RRai++++++GLR++Gn++lp+raD+n+Vl+AL+reAGw+ve DGttyr++  p     ++gs+  + +es+l    k
  CCG024667.1  73 GKGKREREKEKERTKLRERHRRAITSRMLTGLRQYGNFPLPARADMNDVLAALAREAGWTVETDGTTYRQSPPPS----HTGSFGVRPVESPLL---K 163
                  899******************************************************************776655....888888888888866...3 PP

       DUF822 100 ssalaspvesysaspksssfpspssldsislasa..a 134
                   +   +  e + ++++ ++++sp slds+ +++   +
  CCG024667.1 164 HC---AVKECQPSVLRIDESLSPGSLDSMVISERenS 197
                  33...34456667788899999999999999877441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.6E-4473210IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.36E-158233666IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.6E-172235669IPR013781Glycoside hydrolase, catalytic domain
PfamPF013739.6E-84260632IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54273287IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54294312IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54316337IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54409431IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54482501IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54516532IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54533544IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54551574IPR001554Glycoside hydrolase, family 14
PRINTSPR007503.1E-54589611IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MNTNNNNQDL LINPQQTQIP QPDPYSHLPH PVQPGPSPHP HPQTRRPRGF AATAAAAASS  60
DNTSAVSSPN ASGKGKRERE KEKERTKLRE RHRRAITSRM LTGLRQYGNF PLPARADMND  120
VLAALAREAG WTVETDGTTY RQSPPPSHTG SFGVRPVESP LLKHCAVKEC QPSVLRIDES  180
LSPGSLDSMV ISERENSRNE KYTSTSPINS VIECLDADQL IQDVHSGMHQ NDFTENSYVP  240
VYVMLANGFI NNCCQLIDPE GVRQELSHMK SLDVDGVVVE CWWGVVEAWS PQKYAWSGYR  300
ELFNIILEFK LKLQVAMAFH EYGGTDSGDV LISLPQWVLE IGKDNQDIFF TDREGRRNTE  360
CLSWGIDKER VLKGRTGIEV YFDFMRSFRT EFNDLFTEGL ITAIEIGLGP SGELKYPSFS  420
ERIGWRYPGI GEFQCYDKYS QQNLRKAAKL RGHSFWARGP DNAGQYNSRP HETGFFCERG  480
DYDSYFGRFF LHWYSQSLID HADNVLSLAS FAFEDTKIII KVPAVYWWYR TASHAAELTA  540
GYYNPTNQDG YSPVFEVLKK HSVIMKFVCS GLQVSGFEKD EALVDPEGLS WQVLNSAWDR  600
GLTVAGVNML ACYDREGYRR VVEMAKPRND PDHHHFSFFV YQQPSALAQG TICFPELDYF  660
IKCMHGEKSK AITVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12323762810401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027980.10.0PREDICTED: beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2K2B4Z10.0A0A2K2B4Z1_POPTR; Beta-amylase
STRINGPOPTR_0003s10570.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]