PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024606.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WOX
Protein Properties Length: 375aa    MW: 42533 Da    PI: 6.9552
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024606.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.34e-2183142357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql++Le+l+++ +r+ps++++++++++l    +++ ++V++WFqN++a+e++
  CCG024606.1  83 SRWNPTPEQLRTLEDLYRRgTRTPSTDQIQDITAQLrrygRIEGKNVFYWFQNHKARERQ 142
                  7*****************99**************************************97 PP
2Wus_type_Homeobox1153.6e-3782144365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Le+ly++G+rtP++++iq+ita+L++yG+ie+kNVfyWFQN+kaRerqk+
        CCG024606.1  82 SSRWNPTPEQLRTLEDLYRRGTRTPSTDQIQDITAQLRRYGRIEGKNVFYWFQNHKARERQKR 144
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-580147IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-883142IPR009057Homeodomain-like
SuperFamilySSF466893.89E-1283148IPR009057Homeodomain-like
PfamPF000469.7E-1983142IPR001356Homeobox domain
CDDcd000866.27E-684144No hitNo description
PROSITE profilePS5007110.94888143IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MWMMGYNDGG EFNISDSFNG RKLRPLVPRP ITSTNNTPTA SSPPCLGSRL HNTDFFALNQ  60
YHLASMADQN KREFNTQPVV MSSRWNPTPE QLRTLEDLYR RGTRTPSTDQ IQDITAQLRR  120
YGRIEGKNVF YWFQNHKARE RQKRRRQMES DSFDVHQQNG HGIEIFERKE SEASRTGYEG  180
EQTKNWAPST NCSTLSEESV SISRATKGAM AEYCRPDGWM QLDEGELQHR RNFIERNATW  240
EMMQLSCPSP THQINTISST SSTTTMSKQG AAAAKLIKAH DLNVFMAPYR ENGHHGALIN  300
QFNSSVINDG DEPRGGTGES QTLQLFPLRS GGDGNNNIES INERESHEVS VSAAEALNAN  360
NYAPCQFFEF LPLKH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9827000.0KF982700.1 Populus tomentosa WOX1b (WOX1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008807.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLW8PIJ90.0W8PIJ9_POPTO; WOX1b
STRINGPOPTR_0015s04520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-59WUSCHEL related homeobox 1