PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024586.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 313aa    MW: 34982.6 Da    PI: 9.7231
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024586.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-18171225256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++tk+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  CCG024586.1 171 RKKLRLTKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 225
                  788899***********************************************98 PP
2HD-ZIP_I/II127.36.4e-41171261192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rl+k+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +lk
  CCG024586.1 171 RKKLRLTKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTKENRRLQKELQELR-ALK 261
                  69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.3E-547137IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466895.01E-18165228IPR009057Homeodomain-like
PROSITE profilePS5007116.827167227IPR001356Homeobox domain
SMARTSM003893.8E-15169231IPR001356Homeobox domain
CDDcd000862.10E-15171228No hitNo description
Gene3DG3DSA:1.10.10.602.5E-17171225IPR009057Homeodomain-like
PfamPF000461.8E-15171225IPR001356Homeobox domain
PROSITE patternPS000270202225IPR017970Homeobox, conserved site
PfamPF021833.4E-11227261IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.2E-25227270IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MELALSLGDA SKPFKFLDKT PKLSSNDLGF CMGLGSGFTA STRSHDKLGS LEKNHQEDER  60
RISSDPPLQL VLLPFSPVPR RHQPPSKTRF PWLADNLVSE PGSTEGSGRG FDVNRLSMDD  120
ADEGAALSSP NSAASSFQMD FGIRSGRGSK RDLEAIEASR ASDDEENGLT RKKLRLTKDQ  180
SAFLEESFKE HNTLNPKQKL ALAKQLNLRP RQVEVWFQNR RARTKLKQTE VDCEYLKRCC  240
ETLTKENRRL QKELQELRAL KTSQPFYMQL PATTLTMCPS CERVATTSTT TNPSTSSTTS  300
KTLSLPAKPR LFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175TRKKLRL
2219227RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2629441e-103AM262944.1 Phillyrea latifolia partial mRNA for type II homeodomain-leucine zipper protein precursor (ophh-61B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005283.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X1
SwissprotP466651e-100HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2K2A4R10.0A0A2K2A4R1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20820.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-80homeobox from Arabidopsis thaliana