PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024561.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 431aa MW: 46849.8 Da PI: 5.1796

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024561.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	100	159	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ CCG024561.1 100 PDKILPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 159 7899*****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	92	157	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-32	102	158	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	104	158	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	106	142	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MKGESKDPAF KLFGRKIPVP DTQFPAEPPA KGSCSHITKL ETEGPSEENS EEPEIFSALG 60 QGKEEIQAAM QVNETEVIAK PKEGQLESNG PDEERVFKKP DKILPCPRCN SLDTKFCYFN 120 NYNVNQPRHF CKNCQRYWTA GGTMRNVPIG AGRRKNKHLA TQYRQILVSS DGIPIARMEN 180 SDSVGHQLSS SVESATTLSP STANGTVLKF GPEAPLCDSM ETVLNLGDPK RYVEMSSVNY 240 QDNGEEPPSC GSSKAAFIVC ENELPENIMQ EQVDLPASSN KLSAPHSLLC YSVPSWVFPW 300 SPAWNNDTSM AAAQYSSGQA CITNVPTQVQ LCPTPMLAVP SICPPSIPLQ FVPASYWGCM 360 PTWTAGTGNV PLCGSNGCLS PSSPTTTSYC SGNGSPKLGK HSRDPKFTDE EKTEKCILVP 420 KTLRIDDPSE A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MKGESKDPAF KLFGRKIPVP DTQFPAEPPA KGSCSHITKL ETEGPSEENS EEPEIFSALG  60
QGKEEIQAAM QVNETEVIAK PKEGQLESNG PDEERVFKKP DKILPCPRCN SLDTKFCYFN  120
NYNVNQPRHF CKNCQRYWTA GGTMRNVPIG AGRRKNKHLA TQYRQILVSS DGIPIARMEN  180
SDSVGHQLSS SVESATTLSP STANGTVLKF GPEAPLCDSM ETVLNLGDPK RYVEMSSVNY  240
QDNGEEPPSC GSSKAAFIVC ENELPENIMQ EQVDLPASSN KLSAPHSLLC YSVPSWVFPW  300
SPAWNNDTSM AAAQYSSGQA CITNVPTQVQ LCPTPMLAVP SICPPSIPLQ FVPASYWGCM  360
PTWTAGTGNV PLCGSNGCLS PSSPTTTSYC SGNGSPKLGK HSRDPKFTDE EKTEKCILVP  420
KTLRIDDPSE A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325441.2	0.0	cyclic dof factor 3 isoform X1
TrEMBL	A0A2K1WPB4	0.0	A0A2K1WPB4_POPTR; Uncharacterized protein
STRING	POPTR_0019s05720.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-43	cycling DOF factor 2