PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG024466.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HSF | ||||||||
Protein Properties | Length: 340aa MW: 36550.4 Da PI: 4.6983 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.3 | 3.8e-36 | 40 | 131 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k ll++i+ CCG024466.1 40 FLTKTYQLVDDPSVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKALLRDIQ 127 9*****************************************************************99.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k CCG024466.1 128 RRKI 131 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.3E-59 | 36 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.0E-38 | 37 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.55E-36 | 37 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.7E-21 | 40 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.8E-32 | 40 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-21 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 79 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.7E-21 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MPPLPVEQTG ESPAACGGGA AAGGPTSGSG DSQRSLPTPF LTKTYQLVDD PSVDDLISWN 60 DDGSTFIVWR PAEFARDLLP KYFKHNNFSS FVRQLNTYGF RKVVPDRWEF ANDCFRRGEK 120 ALLRDIQRRK ISPMAASAVT PASVTVAAIP TVARAVSPAN SGDDQGISST SSPGGAGTAG 180 GANSFLRTTS CTTTPEILEE NERLRKENSA LSHELTQLRG LCNNIMVLMN NYASPQLEGN 240 SNNNLADVKA ALELLPVADE VAVSGRPRDG AAATESEVSP RLFGVSIGFK RVRIDEEDEE 300 EGNRQQTEGK EHGSDVKAEP LDGSTGNSDH QDQRWLDLGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 4e-28 | 40 | 129 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 4e-28 | 40 | 129 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 4e-28 | 40 | 129 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 4e-28 | 40 | 129 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 4e-28 | 40 | 129 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP014007 | 0.0 | KP014007.1 Populus simonii heat shock transcription factor B2b (HsfB2b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029218.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b | ||||
Refseq | XP_011029219.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b | ||||
Swissprot | Q9T0D3 | 6e-96 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | B9GKL4 | 0.0 | B9GKL4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s08990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 3e-95 | HSF family protein |
Publications ? help Back to Top | |||
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