PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024453.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 666aa MW: 73950.5 Da PI: 5.6542

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024453.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	421.5	7.2e-129	284	651	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 lv+lL++c+ea++ ++ + ++++La+l lasp+g p+ Rlaay+teALa r++r +++++++ +p+e ++ +++ + l+l+++vsPi+kf h+ta CCG024453.1 284 LVSLLTACVEAITLKNIAGINNFLAELGGLASPKGIPISRLAAYYTEALALRVTRLWPHIFHITAPRELDR-VDDDSGTGLRLLNQVSPIPKFIHFTA 380 6899**************************************************************984.5667778889************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+ sk+el+etg+rL+ fAe+l++pfef++ v++rled++l++L+v CCG024453.1 381 NEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLTGFAEALNLPFEFHP-VVDRLEDVRLWMLHV 473 ***********************************************....***********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 k++E++a+n+v+q+h++l + + +++L l++s++P +vvv+eqea+hn++++ +r++++l+yy+alfds++++lp +s rik+E++ +rei CCG024453.1 474 KERECVAINCVFQMHKTLYDGSGGA--LRDFLGLIRSTNPAIVVVAEQEAEHNAPNLETRVCNSLKYYAALFDSIDSSLPFDSPVRIKIEEM-YAREI 568 *************95543333..589**********************************************************.89* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374 +n+vaceg++r erhe + +W++ +e+ G++ +se+++ q ++ll++++ d y+v+++ ++l l W d+pL++vSaW+ CCG024453.1 569 RNIVACEGSDRHERHEMFDNWKKLMEQGGLRCSVISEREMLQSQMLLKMYSCDSYQVKKHgqeGAALALSWLDQPLYTVSAWT 651 *************************************************9996644256667************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.215	258	628	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-126	284	651	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE SPAQFQASHF QLPSMSTQRL DLPCTFSRKE SSRSQPIRPV 60 GVGLSVDKPL ESKTSSCSLK QNIRLPPLAT GNQSVKDEFW ERGKSLKRFA EQSVDESCIN 120 RAKRKRGNND DVKPDDFCEG GDSLSLGQLG SGNFWFQPSL EVPKGLNPQQ FPFSLTCSGD 180 EERVCFVPTE VISPPLPLSN NPWVGSVITE ITDLGEKDGE SSQRPVKEAS GSSTSSESQS 240 LGVRLSENVV EHEVGNGSRN PHPQEGAAME AAETDQREFQ GFELVSLLTA CVEAITLKNI 300 AGINNFLAEL GGLASPKGIP ISRLAAYYTE ALALRVTRLW PHIFHITAPR ELDRVDDDSG 360 TGLRLLNQVS PIPKFIHFTA NEMLLRAFEG KDRVHIIDFD IKQGLQWPSL FQSLASRTNP 420 PSHVRITGIG ESKQELNETG DRLTGFAEAL NLPFEFHPVV DRLEDVRLWM LHVKERECVA 480 INCVFQMHKT LYDGSGGALR DFLGLIRSTN PAIVVVAEQE AEHNAPNLET RVCNSLKYYA 540 ALFDSIDSSL PFDSPVRIKI EEMYAREIRN IVACEGSDRH ERHEMFDNWK KLMEQGGLRC 600 SVISEREMLQ SQMLLKMYSC DSYQVKKHGQ EGAALALSWL DQPLYTVSAW TPLDIAGSSS 660 SFSQPS

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE SPAQFQASHF QLPSMSTQRL DLPCTFSRKE SSRSQPIRPV  60
GVGLSVDKPL ESKTSSCSLK QNIRLPPLAT GNQSVKDEFW ERGKSLKRFA EQSVDESCIN  120
RAKRKRGNND DVKPDDFCEG GDSLSLGQLG SGNFWFQPSL EVPKGLNPQQ FPFSLTCSGD  180
EERVCFVPTE VISPPLPLSN NPWVGSVITE ITDLGEKDGE SSQRPVKEAS GSSTSSESQS  240
LGVRLSENVV EHEVGNGSRN PHPQEGAAME AAETDQREFQ GFELVSLLTA CVEAITLKNI  300
AGINNFLAEL GGLASPKGIP ISRLAAYYTE ALALRVTRLW PHIFHITAPR ELDRVDDDSG  360
TGLRLLNQVS PIPKFIHFTA NEMLLRAFEG KDRVHIIDFD IKQGLQWPSL FQSLASRTNP  420
PSHVRITGIG ESKQELNETG DRLTGFAEAL NLPFEFHPVV DRLEDVRLWM LHVKERECVA  480
INCVFQMHKT LYDGSGGALR DFLGLIRSTN PAIVVVAEQE AEHNAPNLET RVCNSLKYYA  540
ALFDSIDSSL PFDSPVRIKI EEMYAREIRN IVACEGSDRH ERHEMFDNWK KLMEQGGLRC  600
SVISEREMLQ SQMLLKMYSC DSYQVKKHGQ EGAALALSWL DQPLYTVSAW TPLDIAGSSS  660
SFSQPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-71	291	652	26	380	Protein SCARECROW
5b3h_A	7e-71	291	652	25	379	Protein SCARECROW
5b3h_D	7e-71	291	652	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011029197.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	B9GW73	0.0	B9GW73_POPTR; GRAS family protein
STRING	POPTR_0001s08850.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9161	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein