PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024429.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 396aa MW: 41467.6 Da PI: 5.7829

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024429.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.1	1.9e-35	104	205	2	101
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.ks 97 ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ ++ + + +s+++++ ++++ k+ CCG024429.1 104 TTRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVsVGGTLKIPTTTSNNSNSLTETPkKR 201 67999***********************************************************8888855532222222222222222222222122 PP TCP 98 kksq 101 k+++ CCG024429.1 202 KRPS 205 2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.5E-29	109	186	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.274	110	164	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MASFQDHGMD PDDEGGTSDL STSAGDPEDN RNSSSICSNG CLKISTIDET EAFQVMPLKE 60 EPFDSDPSSD PDQRTNPMGV VPLAMQMQTP MPVSMPLPVT TTTTTRRAST KDRHTKVEGR 120 GRRIRIPATC AARIFQLTRE LGHKSDGETV RWLLEHAEEA IIEATGTGTV PAIAVSVGGT 180 LKIPTTTSNN SNSLTETPKK RKRPSNSEFC DISEAAPVST SQTSGLAPIK PSAPLAAAAT 240 PQGMVPVFAV GNTGMMVPAN AFWMIPQAAA TAAPANQQIW ALSPSLTPVF NVAAARPVSS 300 FVASTNSGNE TGVNIAAAAS VVNIPSEVEL RSPSPVVAST SVGAKVATKS TMAPSVSSNS 360 GSGKGGKAQM LRDFSLEIYD KQELQLMGRS GNNQPR

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MASFQDHGMD PDDEGGTSDL STSAGDPEDN RNSSSICSNG CLKISTIDET EAFQVMPLKE  60
EPFDSDPSSD PDQRTNPMGV VPLAMQMQTP MPVSMPLPVT TTTTTRRAST KDRHTKVEGR  120
GRRIRIPATC AARIFQLTRE LGHKSDGETV RWLLEHAEEA IIEATGTGTV PAIAVSVGGT  180
LKIPTTTSNN SNSLTETPKK RKRPSNSEFC DISEAAPVST SQTSGLAPIK PSAPLAAAAT  240
PQGMVPVFAV GNTGMMVPAN AFWMIPQAAA TAAPANQQIW ALSPSLTPVF NVAAARPVSS  300
FVASTNSGNE TGVNIAAAAS VVNIPSEVEL RSPSPVVAST SVGAKVATKS TMAPSVSSNS  360
GSGKGGKAQM LRDFSLEIYD KQELQLMGRS GNNQPR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	203	PKKRKRP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM003688	1e-82	HM003688.1 Passiflora morifolia TCP1 (TCP1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011029153.1	0.0	PREDICTED: transcription factor TCP9-like
TrEMBL	B9GKQ5	0.0	B9GKQ5_POPTR; Uncharacterized protein
STRING	POPTR_0001s08590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-48	TCP family protein