PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG024426.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TALE | ||||||||
Protein Properties | Length: 323aa MW: 36630.3 Da PI: 7.1887 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23 | 1.3e-07 | 250 | 283 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + CCG024426.1 250 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 283 469*****************************87 PP | |||||||
2 | ELK | 25.3 | 3.4e-09 | 204 | 225 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ CCG024426.1 204 ELKIELKQGFKSRIEDVREEIL 225 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.0E-19 | 35 | 79 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.4E-17 | 37 | 78 | IPR005540 | KNOX1 |
SMART | SM01256 | 9.9E-22 | 93 | 148 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.1E-16 | 96 | 147 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 204 | 224 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 224 | 287 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-11 | 226 | 291 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-16 | 226 | 291 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.36E-11 | 227 | 288 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-25 | 231 | 289 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 244 | 283 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MQEPNLGMMG SGSGGALGGL SSGEMSVSLS GDQSRQLKAE IATHPLYEQL LSAHVSCLRV 60 ATPIDQLPLI DAQLSQSHHL LRSYASQHSQ HGHSLSPHER QDLDNFLAQY LIILCTFKDQ 120 LQQHVRVHAV EAVMACREIE TTLQALTGVT LGEGTGATMS DDEDDLQMDF SLDQSSADGH 180 DMMGFGPLLP TESERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTSV 240 LKNWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHSNSQ SVTSLKSKRK 300 STFYLLTTRY RSCNRWRPNI SYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 227 | 283 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144292 | 0.0 | EF144292.1 Populus trichocarpa clone PX0015_H02 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011029150.1 | 0.0 | PREDICTED: homeobox protein HD1 | ||||
Swissprot | Q9FPQ8 | 1e-170 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A0E3VMX7 | 0.0 | A0A0E3VMX7_POPNI; Homeodomain transcription factor of the Knotted family | ||||
TrEMBL | A9P848 | 0.0 | A9P848_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_024801m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-168 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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