PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024413.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 330aa    MW: 37935 Da    PI: 7.4575
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024413.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.5e-1527118187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  +W+++ + +L++a  ++  +l+rg+l++++W++v++ +     + ++ +r+ +qCk++++ ++k+yk +k +  + + + +s++p+f++l+a
  CCG024413.1  27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADTVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKSRVVSSNGTLTSSWPFFERLDA 118
                  7****************************************99999*************************999998888899******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2625119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEDLIDSSSV TPSTAPHSRS LPIREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQDV  60
ADTVNALHGH TKKTHRTDVQ CKNRIDTIKK KYKIEKSRVV SSNGTLTSSW PFFERLDALI  120
GSNFNSSIKK PPSPSISPSP PVALPLHPTY RRTPPKRPLP VDDGYFRRNY SAMAAAAAAQ  180
ESDSEEEEEE EEEFEAGERE SVEEDGEGEG IKRLARAVEK FGEVFERVES EKLKQMGDLE  240
KQRMKFAKDL EMERMRIFTE TQIQLEKIKK DYNVKQMAML LGDLLQNSSG KRYGVNCWRI  300
LEMGSCSALV RRAQFCFYPP VKIRYRYLII
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368736.20.0trihelix transcription factor ASIL2 isoform X1
TrEMBLA0A3N7E9310.0A0A3N7E931_POPTR; Uncharacterized protein
STRINGPOPTR_0001s08350.11e-153(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-39sequence-specific DNA binding transcription factors