PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG024272.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 24653.9 Da PI: 7.1284 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 7e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v + G g+W++++r+ g++R++k+c++rw +yl CCG024272.1 16 KGPWTPEEDKLLSEYVSLNGEGRWSSVSRCSGLNRSGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ CCG024272.1 69 RGQITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 113 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.065 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-31 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-16 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.74E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.572 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-9 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVAMMGRGIA EQGWRKGPWT PEEDKLLSEY VSLNGEGRWS SVSRCSGLNR SGKSCRLRWV 60 NYLRPGLKRG QITPQEEGII IELHALWGNK WSTIARYLPG RTDNEIKNYW RTHFKKKDKS 120 SQKQEKREAL ILKQEVQQQQ QQLEAGEMKM VNTIDHFKMH EAQEMYFMYH NLEDQCSPVM 180 TEDAASWADF VVEDYYGLWG GLWNLDDHPP G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-24 | 16 | 117 | 7 | 107 | B-MYB |
1h8a_C | 5e-24 | 16 | 117 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008613.1 | 1e-158 | PREDICTED: transcription factor MYB48-like | ||||
Swissprot | Q4JL84 | 4e-50 | MYB59_ARATH; Transcription factor MYB59 | ||||
Swissprot | Q9LX82 | 5e-50 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A2K2AT89 | 1e-141 | A0A2K2AT89_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s11460.1 | 1e-130 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 3e-69 | myb domain protein 121 |
Publications ? help Back to Top | |||
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