PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024232.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 380aa    MW: 41819.1 Da    PI: 7.2374
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024232.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.61.5e-0631742255
                 SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 n+ p +e    LA+k           +++ +qV +WFqNrR+  
  CCG024232.1 31 NMMPAREVLVSLAEKFsesperkgkiQVQMKQVWNWFQNRRYAI 74
                 677888888888888888888888889**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-9580IPR009057Homeodomain-like
PROSITE profilePS500719.1351377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-71382IPR009057Homeodomain-like
CDDcd000860.001182975No hitNo description
PfamPF167193.0E-40134261IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFMQYEVT EMDAILQEHH NMMPAREVLV SLAEKFSESP ERKGKIQVQM  60
KQVWNWFQNR RYAIRAKSNK APMKLNITPM PRDDSAAARS VPQQVAAPIP DAVPVTTSAS  120
SAAGARRVTS ENSYMEFEAK SGRDGAWYDV GTFQSHRYLD KGNPEVLVRF AGFGPDEDEW  180
LDVCKHVRQR SLPCEASECV AVLPGDLILC FQEGKDQALY FDAHVLDAQR RRHDVRGCRC  240
RFLVRYDHDQ SEEIVPLRKI CRRPETDYRL LQLHAANDSA ATDQQKTSVD PSIASTLRVA  300
ASATETMLQQ QHNTGVAAPV SQANVSQPAK TIIAEPKEAA TLSALDSGNP SFISTAVLAS  360
GMATSSGPGG SGENMQGIKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-431352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-431352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-431352654134SHH1 SAWADEE
4iur_B1e-431352654134SHH1 SAWADEE
4iut_A1e-431352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-431352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-431352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-431352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-431352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-431352654134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038896.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like
SwissprotQ8RWJ71e-146SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K2C9W20.0A0A2K2C9W2_POPTR; Uncharacterized protein
STRINGEOY131340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-129sequence-specific DNA binding transcription factors;sequence-specific DNA binding