PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024222.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YA

Protein Properties

Length: 245aa MW: 27283.3 Da PI: 7.4449

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024222.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.8	3.1e-32	151	207	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k +ksrkpylheSRh+hAlrR+Rg+gGrF CCG024222.1 151 EEPVFVNAKQYHGILRRRQSRAKAESESKA-IKSRKPYLHESRHQHALRRARGCGGRF 207 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.3E-36	149	210	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.232	150	210	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.8E-27	152	207	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	153	175	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	155	175	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.0E-23	184	207	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MLQFHLDLFL FGVNRASRFE FRDSVCITAM TSSLHDLSAG CPDNSEADEQ QNESEPQIQS 60 SSPAMAQAHP HPHPHPGFST PNVQYATPQL GAGHAMAPAT YPYPDPYYRS IFAPYDPQPY 120 PPQPYGAQPM VHLQLMGIQQ AGVPLPSDAV EEPVFVNAKQ YHGILRRRQS RAKAESESKA 180 IKSRKPYLHE SRHQHALRRA RGCGGRFLNS KKKENQEHNE VASGDKSQSN INLNSDKNDI 240 VSSND

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-21	150	215	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182693	1e-72	AC182693.2 Populus trichocarpa clone Pop1-44N6, complete sequence.
GenBank	AC187864	1e-72	AC187864.2 Populus trichocarpa clone Pop1-32E3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038881.1	1e-152	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_011038882.1	1e-152	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Swissprot	Q84JP1	1e-65	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	U5GW44	1e-145	U5GW44_POPTR; Uncharacterized protein
STRING	POPTR_0001s38100.1	1e-145	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-52	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]