PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG024054.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 643aa MW: 72501.3 Da PI: 4.7784

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG024054.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	289.5	9.3e-89	260	640	4	373
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn....sseelaal............... 81 Ll+ Ae vs +++ a++lL++ +e +s g+p++R++ yf eAL++r+ s+ +++ l+ +++ + + CCG024054.1 260 FLLASAEKVSCEQFDSARRLLKHCEECSSDVGNPVERVVYYFSEALRERIEIkSGRVTSNDLKKNQSVHIYdtmkT------Skqsfdmdtammrpnp 351 69999*******************************************97355555555544444322123221......1223445555555555 PP GRAS 82 kl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176 + + v P+ ++sh++ qaI+e v++++r+HiiD+ i +G+QW+ L+qaLasR + p l+iT++g +sk+ +e tg+ L++fA+++++pf CCG024054.1 352 AIleCQRVMPFCQISHFAGIQAIVENVAEAKRIHIIDLVIRNGAQWAILMQALASRFGCPLeLLKITAIGT---TSKHLIEDTGRWLKSFAQTMNIPF 446 225699***********************************************6655499***...6899**************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 +f+++++++l dl+ + L+++ +E++aV +++ +l +++++ d+++k++++++P ++vv+e ea+hn++sF++rf++ l yysa fd+l+a CCG024054.1 447 SFKIVMVSDLLDLKENLLEIDVEEKIAVYSSYLPRKLI----AMPNRLDSMMKMIRNINPCIMVVTEVEANHNAPSFVRRFVDLLFYYSAYFDCLDAC 540 ****************************777776....88888888******************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371 + r++ +r+ E +++g+ i+n va eg+er+ r +l Wr+ + ++G+ + ls++ qakl+++k++ ++++ + +sl+ gWk+ pL s+S CCG024054.1 541 MERDDPNRMITESMYFGEGIRNSVASEGEERIIRSVKLDVWRAFFARFGMVETDLSSSSLYQAKLIVKKFNfASSFTLDVDGKSLLYGWKGTPLHSLS 638 *******************************************************************9899******************* PP GRAS 372 aW 373 W CCG024054.1 639 TW 640 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	42.667	231	620	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.2E-86	260	640	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MENAILSLEG SYSEVEEKSS SANKSSESVD GGKTWKQTPF YCSDGLGPSA GVDFLCSEDE 60 VLYQDERELQ DQTLLGYAAF DELKFDGLSP STQNCQEEIT KLGEIVQNGN LDSEYKKGKR 120 SEDLHLASLE LLRRFGNGFR HFESGRIVES TYDAPPYTAV ESRGFSTEEI MGIAGAKFIQ 180 SASQSVDVSS MFDNPFDLSL AGLSHEDAKM VELSEFLLAS AEKVSCEQFD SARRLLKHCE 240 GCSSDVGNPV ERVVYYFSEF LLASAEKVSC EQFDSARRLL KHCEECSSDV GNPVERVVYY 300 FSEALRERIE IKSGRVTSND LKKNQSVHIY DTMKTSKQSF DMDTAMMRPN PAILECQRVM 360 PFCQISHFAG IQAIVENVAE AKRIHIIDLV IRNGAQWAIL MQALASRFGC PLELLKITAI 420 GTTSKHLIED TGRWLKSFAQ TMNIPFSFKI VMVSDLLDLK ENLLEIDVEE KIAVYSSYLP 480 RKLIAMPNRL DSMMKMIRNI NPCIMVVTEV EANHNAPSFV RRFVDLLFYY SAYFDCLDAC 540 MERDDPNRMI TESMYFGEGI RNSVASEGEE RIIRSVKLDV WRAFFARFGM VETDLSSSSL 600 YQAKLIVKKF NFASSFTLDV DGKSLLYGWK GTPLHSLSTW NFT

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MENAILSLEG SYSEVEEKSS SANKSSESVD GGKTWKQTPF YCSDGLGPSA GVDFLCSEDE  60
VLYQDERELQ DQTLLGYAAF DELKFDGLSP STQNCQEEIT KLGEIVQNGN LDSEYKKGKR  120
SEDLHLASLE LLRRFGNGFR HFESGRIVES TYDAPPYTAV ESRGFSTEEI MGIAGAKFIQ  180
SASQSVDVSS MFDNPFDLSL AGLSHEDAKM VELSEFLLAS AEKVSCEQFD SARRLLKHCE  240
GCSSDVGNPV ERVVYYFSEF LLASAEKVSC EQFDSARRLL KHCEECSSDV GNPVERVVYY  300
FSEALRERIE IKSGRVTSND LKKNQSVHIY DTMKTSKQSF DMDTAMMRPN PAILECQRVM  360
PFCQISHFAG IQAIVENVAE AKRIHIIDLV IRNGAQWAIL MQALASRFGC PLELLKITAI  420
GTTSKHLIED TGRWLKSFAQ TMNIPFSFKI VMVSDLLDLK ENLLEIDVEE KIAVYSSYLP  480
RKLIAMPNRL DSMMKMIRNI NPCIMVVTEV EANHNAPSFV RRFVDLLFYY SAYFDCLDAC  540
MERDDPNRMI TESMYFGEGI RNSVASEGEE RIIRSVKLDV WRAFFARFGM VETDLSSSSL  600
YQAKLIVKKF NFASSFTLDV DGKSLLYGWK GTPLHSLSTW NFT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-39	265	641	26	378	Protein SCARECROW
5b3h_D	9e-39	265	641	26	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004894.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A3N7G8L0	0.0	A0A3N7G8L0_POPTR; Uncharacterized protein
STRING	cassava4.1_021945m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-53	RGA-like 1