PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023877.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 943aa MW: 102773 Da PI: 6.8277

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023877.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.1	2.1e-15	330	421	1	90
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+ F+ g+ f CCG023877.1 330 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMKLQAGDTDSFM--GDsVVF 421 99************************555567778***********99899999999.*******************..432444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-25	324	460	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.19E-16	327	413	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.65E-19	328	427	No hit	No description
Pfam	PF02362	1.2E-12	330	421	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.559	330	429	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-14	330	429	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.918	617	667	IPR011124	Zinc finger, CW-type
Pfam	PF07496	7.3E-11	622	664	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 943 aa Download sequence Send to blast
MASSSLSIKS CMNATCGVST SNSGGWRKGW ALRSGDFAIL CDNCGSAYER SIFCEVFHSK 60 DSGWRECTSC SKRLHCGCIA SRSLLELLDG GGVNCTSCSR TAGVGPMNGD EKPNGFGKPK 120 VDTIGELHSA SADSQLAAET KLMQLGNCID GIGTRNLLQL QSDETNGSYR KMKQEDILPP 180 VGEIASTIFS NFNQASNASC QTAKPEIHRT VTAAKDLYES LAQTNLSMSL GSSLGNPNPF 240 PGGVVDERVP SKASSPLQQG PRSRHLLPKP PKSAVSMDAN AGMVSQIRVA RPPAEGRGRN 300 QLLPRYWPRI TDQELQQISG DPNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS 360 QPEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMKLQAGD TDSFMGDSVV 420 FTVTLKKSII SIAVTFSRMD PEGKLVMGFR KASNSIAMQD TQPSAIPNGV PSSESYFSGV 480 FENLPIISGY SGLLQSLKGS TDTHLSALSK HLHSASGDIS WNKSEKQEDR TRDGLLLPSL 540 MVPERKRTRN IGSKSKRLLI DSLDAFELKL TWEEAQDLLR PAPSVKPSIV TIEDHDFEEY 600 EEPPVFGKRS IFIVRSIGGQ EQWAQCDSCS KWRRLPVDVL LPPKWTCADN AWDQSRCSCS 660 APDELAPREL ENLLRLNKDF KKRKITSSHQ PAQELESSGL DALANAAILG DVGEQSTTAV 720 VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM RKKKRQSERE 780 AEIAQKTQHL VGPKDEAEVE SSSKLASIPR DPSDNEARSG NELESIGQSN NLSNKLADSG 840 KGHLDLNCHP DREEDSQAGS TRMSMTSFLQ VATLPLDTYL KQNGLASLSE QQASSASHVP 900 PQTGEYEVKI NDDCQPATAA PEQESGDEEN DEPGPDQSQN DPV

Sequence ? help Back to Top

Protein Sequence Length: 943 aa Download sequence Send to blast

MASSSLSIKS CMNATCGVST SNSGGWRKGW ALRSGDFAIL CDNCGSAYER SIFCEVFHSK  60
DSGWRECTSC SKRLHCGCIA SRSLLELLDG GGVNCTSCSR TAGVGPMNGD EKPNGFGKPK  120
VDTIGELHSA SADSQLAAET KLMQLGNCID GIGTRNLLQL QSDETNGSYR KMKQEDILPP  180
VGEIASTIFS NFNQASNASC QTAKPEIHRT VTAAKDLYES LAQTNLSMSL GSSLGNPNPF  240
PGGVVDERVP SKASSPLQQG PRSRHLLPKP PKSAVSMDAN AGMVSQIRVA RPPAEGRGRN  300
QLLPRYWPRI TDQELQQISG DPNSTIVPLF EKVLSASDAG RIGRLVLPKA CAEAYFPPIS  360
QPEGLPLRIQ DVKGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMKLQAGD TDSFMGDSVV  420
FTVTLKKSII SIAVTFSRMD PEGKLVMGFR KASNSIAMQD TQPSAIPNGV PSSESYFSGV  480
FENLPIISGY SGLLQSLKGS TDTHLSALSK HLHSASGDIS WNKSEKQEDR TRDGLLLPSL  540
MVPERKRTRN IGSKSKRLLI DSLDAFELKL TWEEAQDLLR PAPSVKPSIV TIEDHDFEEY  600
EEPPVFGKRS IFIVRSIGGQ EQWAQCDSCS KWRRLPVDVL LPPKWTCADN AWDQSRCSCS  660
APDELAPREL ENLLRLNKDF KKRKITSSHQ PAQELESSGL DALANAAILG DVGEQSTTAV  720
VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PTCTCNVCMT VKRRFKTLMM RKKKRQSERE  780
AEIAQKTQHL VGPKDEAEVE SSSKLASIPR DPSDNEARSG NELESIGQSN NLSNKLADSG  840
KGHLDLNCHP DREEDSQAGS TRMSMTSFLQ VATLPLDTYL KQNGLASLSE QQASSASHVP  900
PQTGEYEVKI NDDCQPATAA PEQESGDEEN DEPGPDQSQN DPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-64	308	459	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	761	772	KRRFKTLMMRKK
2	761	774	KRRFKTLMMRKKKR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ902051	1e-120	HQ902051.2 Populus laurifolia MORC family ATPase (VP) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019009.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2K2A077	0.0	A0A2K2A077_POPTR; Uncharacterized protein
STRING	POPTR_0006s10880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11018	32	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]