PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023825.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 778aa MW: 85112.9 Da PI: 6.6275

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023825.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	417.4	1.2e-127	396	753	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lLl+cAeavs++++e+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ ++s ++++ ++a+++f+ +sP++kfsh+taN CCG023825.1 396 LTLLLQCAEAVSADNFEEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYATLPSMPQS--HTQKMASAFQVFNGISPFVKFSHFTAN 491 579**********************************************************999998..5899999**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 qaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g s+e+le+tg+rL++fA++lg+pfef + va+++ +l++e+L+v+ CCG023825.1 492 QAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----STEALEATGKRLSDFANKLGLPFEFIP-VAEKVGNLNPERLNVS 584 **********************************************....9**********************.7*********** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + Ea+aV++ h+l+d ++s ++ +L l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++ll+rei+ CCG023825.1 585 KSEAVAVHWLQ--HSLYDVTGSDTN----MLYLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAVHYYSALFDSLGASYGEESEERHVVEQQLLSREIR 675 ******9..999999999999....******************.899*************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+a g +r + + +++Wre+l+++GFk ++l +aa+qa+lll +++sdgy++ e++g+l lgWkd L+++SaWr CCG023825.1 676 NVLAVGGPSRSGDVK-FHNWREKLQQSGFKCISLAGNAANQANLLLGMFPSDGYTLAEDKGTLKLGWKDLCLLTASAWR 753 *****888877.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.654	369	733	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-125	396	753	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence Send to blast
MVRKRMASEM MEVQSTMTPL NHRLSRGNTN VYSLSISDNN NDDVIGMTRG IGASSFTSCS 60 NNNINPNNLN PILYPPLNYS TMTSMLPSST NLTAITSAGS ASVSVSGFLS STPSTNLATI 120 CNDNQSQLPA VCGFSGLPLF PPERERNIVR SNAVPPPGLI TTSSASTPTP PMEDAAPATA 180 WIDGIIKDLL HSSTNVSVPQ LIQNVREIIY PCNPNLASLL EYRLRSLTDP IIPANIYPVE 240 RRRNKEAAAV PLPFQRNYNQ GHAPSGLSLD LDHVSNSAPP VSSHVVSHYS NWGPTPPLIC 300 QPNIQQQHQQ PEVHLVHDQQ QQESPSSTSN VTPTILALNQ GHPPQKAQDQ QQEKSSSAET 360 QVASSTPPPS SSVAASRDKK EEMRLQKRNE EGLHLLTLLL QCAEAVSADN FEEANKMLLE 420 ISELSTPFGT SAQRVAAYFS EAMSARLVSS CLGIYATLPS MPQSHTQKMA SAFQVFNGIS 480 PFVKFSHFTA NQAIQEAFER EERVHIIDLD IMQGLQWPGL FHILASRPGG PPYVRLTGLG 540 TSTEALEATG KRLSDFANKL GLPFEFIPVA EKVGNLNPER LNVSKSEAVA VHWLQHSLYD 600 VTGSDTNMLY LLQRLAPKVV TVVEQDLSHA GSFLGRFVEA VHYYSALFDS LGASYGEESE 660 ERHVVEQQLL SREIRNVLAV GGPSRSGDVK FHNWREKLQQ SGFKCISLAG NAANQANLLL 720 GMFPSDGYTL AEDKGTLKLG WKDLCLLTAS AWRPFHMSIE TATTTINHHH HHHRFVTV

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence Send to blast

MVRKRMASEM MEVQSTMTPL NHRLSRGNTN VYSLSISDNN NDDVIGMTRG IGASSFTSCS  60
NNNINPNNLN PILYPPLNYS TMTSMLPSST NLTAITSAGS ASVSVSGFLS STPSTNLATI  120
CNDNQSQLPA VCGFSGLPLF PPERERNIVR SNAVPPPGLI TTSSASTPTP PMEDAAPATA  180
WIDGIIKDLL HSSTNVSVPQ LIQNVREIIY PCNPNLASLL EYRLRSLTDP IIPANIYPVE  240
RRRNKEAAAV PLPFQRNYNQ GHAPSGLSLD LDHVSNSAPP VSSHVVSHYS NWGPTPPLIC  300
QPNIQQQHQQ PEVHLVHDQQ QQESPSSTSN VTPTILALNQ GHPPQKAQDQ QQEKSSSAET  360
QVASSTPPPS SSVAASRDKK EEMRLQKRNE EGLHLLTLLL QCAEAVSADN FEEANKMLLE  420
ISELSTPFGT SAQRVAAYFS EAMSARLVSS CLGIYATLPS MPQSHTQKMA SAFQVFNGIS  480
PFVKFSHFTA NQAIQEAFER EERVHIIDLD IMQGLQWPGL FHILASRPGG PPYVRLTGLG  540
TSTEALEATG KRLSDFANKL GLPFEFIPVA EKVGNLNPER LNVSKSEAVA VHWLQHSLYD  600
VTGSDTNMLY LLQRLAPKVV TVVEQDLSHA GSFLGRFVEA VHYYSALFDS LGASYGEESE  660
ERHVVEQQLL SREIRNVLAV GGPSRSGDVK FHNWREKLQQ SGFKCISLAG NAANQANLLL  720
GMFPSDGYTL AEDKGTLKLG WKDLCLLTAS AWRPFHMSIE TATTTINHHH HHHRFVTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	379	754	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018909.1	0.0	PREDICTED: protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A385JI69	0.0	A0A385JI69_POPTO; Shoot gravitropism 1
TrEMBL	B9MTQ9	0.0	B9MTQ9_POPTR; Uncharacterized protein
STRING	POPTR_0006s11500.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2068	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein