PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 494aa MW: 54042.8 Da PI: 6.6283 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.5 | 2.7e-16 | 108 | 189 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a+ e+ ++l+rg+l++ +Weev++ ++++ +s +qCk+k +nl+kryk ++++ + s s+s++p+f+++e CCG023800.1 108 EWSDVAIGCLLDAYMEKFTQLSRGNLRGRDWEEVAAMVKQG---KSVEQCKNKVDNLKKRYKLERHRITTG-SISTSHWPWFQKME 189 5***********************************99997...699**********************99.677779*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.7E-17 | 106 | 191 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 3.9E-71 | 241 | 487 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 32.377 | 253 | 488 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 1.7E-55 | 254 | 487 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 3.16E-119 | 256 | 488 | No hit | No description |
Pfam | PF00696 | 6.5E-24 | 257 | 467 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MASSCDEDFS LLGDDNHHHH IIHHPYRYPT KSTPIHAPPE SVLPLDGEED RQDNNETDSA 60 FADVNPYSDN EASKRSEREG EIDGGENPYN IYKRGRSGGG EYRKDREEWS DVAIGCLLDA 120 YMEKFTQLSR GNLRGRDWEE VAAMVKQGKS VEQCKNKVDN LKKRYKLERH RITTGSISTS 180 HWPWFQKMED IVGNSLPIKV APPVPAPADE DNGGGGGGGS SASVSRQSKR YANTIASPAG 240 QTNNMMPKSM SKTRWRRVIL KISGVALAGT GPNNIDPKVM TLIAREVAMA CQLGLEIAIV 300 VGARNFFCGN TWVTATGSHR RTAYQIGMMA SVMNSLLLQS ALEKIGVQTR VQTAFAMQEV 360 SEPYSRQRAI RHLEKGRVVI FGGIGAGTGN PLFSTDTAAA VQASEIHAEA VLKGTNVDGV 420 YDCHSPDSNF IFEHISIRDL VSRGATSMDM MALTFCEENN IPVVIFNLLE PGNISKALCG 480 EQVGTLIDQT GRIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek5_B | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek5_C | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek5_D | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek5_E | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek5_F | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek6_A | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek6_B | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek6_C | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek6_D | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek6_E | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
3ek6_F | 1e-59 | 249 | 487 | 3 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018866.1 | 0.0 | PREDICTED: uncharacterized protein LOC105121779 isoform X1 | ||||
TrEMBL | U5GCJ8 | 0.0 | U5GCJ8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s11850.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |