PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023798.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 499aa MW: 57305.1 Da PI: 5.3271

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023798.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.8	3.3e-24	106	205	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+++v++Li a+ +++++++++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d CCG023798.1 106 KWTDNMVRLLIMAVFYIGDEVGSEVsdpigkkkpgglaQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLDT 203 7************99999997533455556777777******************************************559*******99 PP trihelix 85 le 86 ++ CCG023798.1 204 MD 205 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.9E-21	104	230	No hit	No description
SuperFamily	SSF48371	2.11E-5	296	394	IPR016024	Armadillo-type fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005488	Molecular Function	binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MEHNDLGGGI FPGMGSGMLG LELPLHQQQN PQNPHHLQHP QIVAYTHHES DHHQHSQQSA 60 KHAYPFASTK PKQLLSPLSN EDEPSFTGDD STTDGKRKIS PWQRMKWTDN MVRLLIMAVF 120 YIGDEVGSEV SDPIGKKKPG GLAQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK 180 RVNDILGKGT ACRVVENQSL LDTMDLSPKM KDEVRKLLNS KHLFFREMCA YHNSCGHAPS 240 GVASGISNSP EMAADPSHAQ HQQATQQQQQ YQRCSHSTEN TQVVTNSMTE TEGSKMAKLA 300 RNEEDDHDES EEDEDDYAED EEEEDDDDER DDDEEDYEEN EDEAVEGNSR HQNGHGHGDE 360 DDRDEKSSRK RPRKEVFSTT SSLMQQLNGE ITNVLRDGAK SSWEKNQWMK LKLVQLEEQQ 420 VNYQCQAFEL EKQRLKWVKF SSKKEREMER AKLENERRRL ENERMVLIVR KKELELLDTT 480 HQQQQLPSNK RSDPSSIAG

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MEHNDLGGGI FPGMGSGMLG LELPLHQQQN PQNPHHLQHP QIVAYTHHES DHHQHSQQSA  60
KHAYPFASTK PKQLLSPLSN EDEPSFTGDD STTDGKRKIS PWQRMKWTDN MVRLLIMAVF  120
YIGDEVGSEV SDPIGKKKPG GLAQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK  180
RVNDILGKGT ACRVVENQSL LDTMDLSPKM KDEVRKLLNS KHLFFREMCA YHNSCGHAPS  240
GVASGISNSP EMAADPSHAQ HQQATQQQQQ YQRCSHSTEN TQVVTNSMTE TEGSKMAKLA  300
RNEEDDHDES EEDEDDYAED EEEEDDDDER DDDEEDYEEN EDEAVEGNSR HQNGHGHGDE  360
DDRDEKSSRK RPRKEVFSTT SSLMQQLNGE ITNVLRDGAK SSWEKNQWMK LKLVQLEEQQ  420
VNYQCQAFEL EKQRLKWVKF SSKKEREMER AKLENERRRL ENERMVLIVR KKELELLDTT  480
HQQQQLPSNK RSDPSSIAG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018864.1	0.0	PREDICTED: 46 kDa FK506-binding nuclear protein-like
TrEMBL	A0A2K2A0Q8	0.0	A0A2K2A0Q8_POPTR; Uncharacterized protein
STRING	POPTR_0006s11870.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4820	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-77	sequence-specific DNA binding transcription factors