PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG023727.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 199aa MW: 21455 Da PI: 6.8014 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 108.9 | 7.5e-34 | 53 | 118 | 6 | 71 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssas 71 ++++++hTkv+gR+RRvR++a++aar+F+L++eLG+ +d++tieWLl++a+++i+++tgt+++++ CCG023727.1 53 SQSKDRHTKVNGRGRRVRMPALTAARVFQLTRELGHRSDGETIEWLLRNAEASIIAATGTGTIPSI 118 678*********************************************************988883 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-28 | 54 | 122 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.994 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MVLDNLSSTS NNQQKQQQNS NLNNNNHVVP TTIPAASSGS DSKLAHPRKS TASQSKDRHT 60 KVNGRGRRVR MPALTAARVF QLTRELGHRS DGETIEWLLR NAEASIIAAT GTGTIPSIPI 120 STTVGPAPIS ASPPSVSGEV HPAIDTGPDV FSLTEASCRL DLDYRHMPFT ALLLKPLSEN 180 VDLEAEEGRQ EEVIGEQKM |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018727.1 | 1e-145 | PREDICTED: transcription factor TCP11 | ||||
TrEMBL | A0A2K2A187 | 1e-125 | A0A2K2A187_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12770.1 | 1e-126 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37000.1 | 6e-31 | TCP family protein |