PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 119aa MW: 13674.9 Da PI: 10.3093 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.2 | 4.1e-15 | 7 | 102 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 +lt+ +++rl++p kf+e+ g + + +de+g++W ++++ rkk++ vl+kGW F++ ++L++gD + F+ ++ ++++++ CCG023677.1 7 ILTKT--DTEKRLSVPIKFLESLppfkG-G--HAVYFQAKDERGNVWAFQCSTRKKGRYqkPVLSKGWLAFARKKKLEVGDKIEFYEARDqETEKPFY 99 55443..44557********99998743.3..45679999***********87555554679************************777768888877 PP EEE CS B3 95 kvf 97 +v+ CCG023677.1 100 GVR 102 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.924 | 2 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.28E-18 | 3 | 87 | No hit | No description |
SuperFamily | SSF101936 | 1.41E-14 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.0E-8 | 4 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-17 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.5E-13 | 6 | 101 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MGSCSKILTK TDTEKRLSVP IKFLESLPPF KGGHAVYFQA KDERGNVWAF QCSTRKKGRY 60 QKPVLSKGWL AFARKKKLEV GDKIEFYEAR DQETEKPFYG VRIEREIKIL GAVIGYTNP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 76 | RKKGRYQKPVLSKGWLAFARKKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-165 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008418.1 | 8e-84 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | B9IDU0 | 2e-72 | B9IDU0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01820.1 | 3e-73 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34390.1 | 1e-09 | auxin response factor 22 |