PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023676.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 119aa    MW: 13628.1 Da    PI: 10.8043
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023676.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84e-184102197
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                  f k+lt+ d+ k  rl++p kf+++    k+   ++ + +de+g++W+++++ rkk++    vl+kGW  F++ ++Lk+gD +vF+  ++ ++++++ 
  CCG023676.1   4 FSKILTKTDAEK--RLSVPIKFLKSLpPFKSGHAVDFQAKDERGKVWTFQCSTRKKGQYkkPVLSKGWLAFANKKKLKVGDKIVFYKGRDqETEKPFY 99 
                  678886666555..69*******999*445567899***************88777766789************************777767777777 PP

                  EEE CS
           B3  95 kvf 97 
                  +v+
  CCG023676.1 100 GVR 102
                  765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.8552104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-21393IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-20391No hitNo description
SuperFamilySSF1019362.55E-16393IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-164102IPR003340B3 DNA binding domain
SMARTSM010198.0E-124104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MAIFSKILTK TDAEKRLSVP IKFLKSLPPF KSGHAVDFQA KDERGKVWTF QCSTRKKGQY  60
KKPVLSKGWL AFANKKKLKV GDKIVFYKGR DQETEKPFYG VRVEREIKLL GAVIGYMNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15478RKKGQYKKPVLSKGWLAFANKKKLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-177AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008417.12e-82PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9IDU14e-78B9IDU1_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01830.16e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-11B3 family protein