PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023675.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 115aa    MW: 13147.5 Da    PI: 11.4184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023675.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.92.4e-15587283
                 EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                  k+l +    +++rl++p +f+++      g      +t   +de+g+ W++++++r+++    vl++GW  Fvk+++L++gD v F 
  CCG023675.1  5 SKILRKI--DTEKRLSVPIRFLRSLppfklG---SHAVTFEATDEKGEAWTFQCSIRNRGHPkPVLQRGWVAFVKSKKLQVGDKVRFI 87
                 5666444..45567*********99998532...2457888999**********8844444359*********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.7562105IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-14387IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-64104IPR003340B3 DNA binding domain
PfamPF023621.1E-12487IPR003340B3 DNA binding domain
CDDcd100171.24E-17486No hitNo description
Gene3DG3DSA:2.40.330.102.4E-17492IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MTEFSKILRK IDTEKRLSVP IRFLRSLPPF KLGSHAVTFE ATDEKGEAWT FQCSIRNRGH  60
PKPVLQRGWV AFVKSKKLQV GDKVRFIKHM NRATAAISYK VRAEKAIKIF GATFG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-134AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008416.13e-80PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DXJ15e-72U7DXJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0492s00200.19e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.18e-09auxin response factor 22