PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023673.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 13772.2 Da PI: 11.3702 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.1 | 5.7e-17 | 4 | 89 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 f k+l s + +++rl++p +f+++ ++++ +t +de+g+ W +++++rk+++ vlt+GW Fvk+++L++gD v F CCG023673.1 4 FSKIL--SETDTKKRLSVPIRFLRSLpsfKLDS-HAITFEATDEKGKAWPFQCSIRKRGQYpkPVLTRGWVAFVKSKKLQVGDKVRFIK 89 67888..88888899*********999986553.56889999***********9988888889**********************9983 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.447 | 2 | 106 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-14 | 4 | 91 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.40E-18 | 4 | 87 | No hit | No description |
SMART | SM01019 | 4.3E-7 | 4 | 105 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.9E-15 | 4 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MAEFSKILSE TDTKKRLSVP IRFLRSLPSF KLDSHAITFE ATDEKGKAWP FQCSIRKRGQ 60 YPKPVLTRGW VAFVKSKKLQ VGDKVRFIKR KNRATATTSY KVRAEKAIKI FGATFGYARI |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-153 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003895.1 | 1e-73 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | B9IDU9 | 2e-69 | B9IDU9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01840.1 | 3e-70 | (Populus trichocarpa) | ||||
STRING | POPTR_0015s01900.1 | 3e-70 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34390.1 | 6e-09 | auxin response factor 22 |