PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023660.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

HD-ZIP

Protein Properties

Length: 304aa MW: 34023.6 Da PI: 7.3171

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023660.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.6e-18	160	214	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F++++++ +++e LA++l+L rqV vWFqNrRa+ k CCG023660.1 160 RKKLRLTKEQSALLEESFKQHSNLYPKQKEALARQLNLRPRQVEVWFQNRRARTK 214 788899***********************************************98 PP
2	HD-ZIP_I/II	121.3	5e-39	160	249	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++++alk+en rL+ke +eL+ +l CCG023660.1 160 RKKLRLTKEQSALLEESFKQHSNLYPKQKEALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEALKDENGRLQKELQELK-AL 249 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-17	149	210	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.97E-18	150	217	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.232	156	216	IPR001356	Homeobox domain
SMART	SM00389	1.5E-14	158	220	IPR001356	Homeobox domain
CDD	cd00086	2.19E-16	160	217	No hit	No description
Pfam	PF00046	9.9E-16	160	214	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	191	214	IPR017970	Homeobox, conserved site
SMART	SM00340	2.9E-23	216	259	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	4.1E-10	216	250	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGCLDDGCTT GLVLGLGFAP LTDLERSTSK PGDYSNRLIR PQIKPSLKFD HNPSTSTSFE 60 LSLSLVLSSE TYSHAGSRQK TMDGEKGCEE SIGAHDLLYR QASPDQSAVS SFSSGRVKRE 120 XXXXXXXXXX XERDLGCEDI EVERISSRVS DEDEDGTNAR KKLRLTKEQS ALLEESFKQH 180 SNLYPKQKEA LARQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEFLKKCCE ALKDENGRLQ 240 KELQELKALK LAQPFYMHMP AATLTMCPSC ERIGGVGDGA SKSSFSMVPK PDFYNTFTNP 300 SAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	216	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011008397.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	4e-93	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2K2AGX7	0.0	A0A2K2AGX7_POPTR; Uncharacterized protein
STRING	POPTR_0005s19080.1	1e-174	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-79	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]