PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 35075.7 Da PI: 6.7894 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.7 | 2.8e-50 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp+GfrFhPtd+elv++yL kk+ g+++++ +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + + CCG023547.1 14 LPAGFRFHPTDDELVNHYLIKKCGGQSISV-PIIAEIDLYKYDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGR--PK 108 799***************************.88***************7666789*************************************98..78 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+ap+g kt+W+mheyrl CCG023547.1 109 PLGIKKALVFYAGKAPRGIKTNWIMHEYRL 138 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-61 | 6 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.828 | 14 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-26 | 15 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MKGNGSAAAD QLELPAGFRF HPTDDELVNH YLIKKCGGQS ISVPIIAEID LYKYDPWQLP 60 EMALYGEKEW YFFSPRDRKY PNGSRPNRAA GTGYWKATGA DKPIGRPKPL GIKKALVFYA 120 GKAPRGIKTN WIMHEYRLAN VDRSAGKKNN LRLDDWVLCR IYNKKGSIEK HFPADRKSIA 180 KYAEMEEQKP NINEMSGYKN GGSTMGAPTM MMMSNSNDLL NMDTSDSTPR LHTDSSCSEH 240 VLSPELTCEK EVQSQPKSWN DQLDSVFDFN FNYIEDGLQD DPFASQVQFQ MDQLSPLQDM 300 FMYLQRPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-82 | 8 | 170 | 9 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU223784 | 0.0 | CU223784.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011031100.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-125 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B9H4N3 | 0.0 | B9H4N3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s07060.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-125 | NAC family protein |