PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023491.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CAMTA

Protein Properties

Length: 1118aa MW: 126195 Da PI: 5.7212

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023491.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	177.1	2.3e-55	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 ++ ++rwl++ ei++iL n+++++++ e+++ p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+e+n++fqrr+y CCG023491.1 20 VEAQNRWLRPAEIVEILSNYQRFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLHCYYAHGEDNENFQRRSY 117 6679******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 w+Leeel++ivlvhy+evk CCG023491.1 118 WMLEEELSHIVLVHYREVK 136 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.374	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.1E-75	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.2E-48	21	134	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.45E-15	537	623	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	18.961	708	841	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.4E-17	717	833	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.44E-13	718	829	No hit	No description
SuperFamily	SSF48403	1.55E-16	724	831	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	7.9E-7	742	832	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.698	770	802	IPR002110	Ankyrin repeat
SMART	SM00248	0.011	770	799	IPR002110	Ankyrin repeat
SMART	SM00248	930	809	838	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.14E-7	940	994	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	2	943	965	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.206	946	973	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0047	946	964	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0039	966	988	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.597	967	991	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.3E-4	969	988	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1118 aa Download sequence Send to blast
MADSRRYPLG NQLDIQQILV EAQNRWLRPA EIVEILSNYQ RFRIAPEPAH MPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE NFQRRSYWML 120 EEELSHIVLV HYREVKGTRT NVNRIKEHEE PIPCSQETED MMLNSETDTS VSSSFRSNGY 180 QVSTRTTDST SMNSALASEY EDAESGYNNQ ASSRFHSFLE MQRPAMEKMD AGASIPYDHM 240 PFSSGYQGKM PAVPVMEFIS PAQVNTAKDT IGTEPASEPQ KDFDLPSWED VLENCSREIE 300 SVPFQTTFLS QADTVGLGVI PKQDDILEKF LTNSFDKRQG MEGVIPKQED ILEKIITNSF 360 DRSQDIGSHL LDQEAWQTIE GGYSHRPKWS LDQKLHLDAD LTARFHDQQL DSGNFINTFE 420 PFCAQENDNH IRKDLQIQPA NSDHGMTLEG KSIYSTSVKQ HILDDSRTEG LKKLDSFTRW 480 MSKELEDVDQ PHLQSSSGTY WITAESENVV DADNPSQGHL DTYTLGPSLS QDQLFSIIDF 540 SPNWAYAGTE IKVLVMGRFL KSREAAENFK WSVMFGEVEV PAEVLADGIL RCATPLHKAG 600 RVPFYVTCSN RVACSEVREF EYRLSHVQDI TYNYINVATE DLHMRLAKLL SLSSAFPSKY 660 DSSDVDEISQ LSNKISSLLK EGNETWDQML KLTSLEGFSS EKLKDQLLQK ALKEQLHEWL 720 LQKVAEGGKG PSVLDEGGQG VLHFAAALGY EWALEPTIVA GVSVNFRDVN GWTALHWAAY 780 YGRERTVASL IHLGAAPGAI TDPTPKYPTG RTPADLASAN GHKGISGFLA ESALSAHLSS 840 LNLEKQDGDA AESSGIPASL TVSDCNETPV KDADIPIGLS LKDSLAAVCN ATQAAARIHQ 900 VFRVQSFQKK QLKEYGDDKF GMSHERALSL IAVKSQKAGQ YDEPVHAAIR IQNKFRGWKG 960 RKEFLIIRQR IVKIQAHVRG HQVRKNYRKI IWSVGILDKI ILRWRRKGSG LRGFKSEALT 1020 EGSSMQVVSS KDDDDDFLKE GRKQTEERSQ IALARVKSMH QHPEAREQYH RLRNVVAEIQ 1080 ETKAMYEWAN NSEAMVEFDD LINLETLWDG DTFLPTDS

Sequence ? help Back to Top

Protein Sequence Length: 1118 aa Download sequence Send to blast

MADSRRYPLG NQLDIQQILV EAQNRWLRPA EIVEILSNYQ RFRIAPEPAH MPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKSGSVDVLH CYYAHGEDNE NFQRRSYWML  120
EEELSHIVLV HYREVKGTRT NVNRIKEHEE PIPCSQETED MMLNSETDTS VSSSFRSNGY  180
QVSTRTTDST SMNSALASEY EDAESGYNNQ ASSRFHSFLE MQRPAMEKMD AGASIPYDHM  240
PFSSGYQGKM PAVPVMEFIS PAQVNTAKDT IGTEPASEPQ KDFDLPSWED VLENCSREIE  300
SVPFQTTFLS QADTVGLGVI PKQDDILEKF LTNSFDKRQG MEGVIPKQED ILEKIITNSF  360
DRSQDIGSHL LDQEAWQTIE GGYSHRPKWS LDQKLHLDAD LTARFHDQQL DSGNFINTFE  420
PFCAQENDNH IRKDLQIQPA NSDHGMTLEG KSIYSTSVKQ HILDDSRTEG LKKLDSFTRW  480
MSKELEDVDQ PHLQSSSGTY WITAESENVV DADNPSQGHL DTYTLGPSLS QDQLFSIIDF  540
SPNWAYAGTE IKVLVMGRFL KSREAAENFK WSVMFGEVEV PAEVLADGIL RCATPLHKAG  600
RVPFYVTCSN RVACSEVREF EYRLSHVQDI TYNYINVATE DLHMRLAKLL SLSSAFPSKY  660
DSSDVDEISQ LSNKISSLLK EGNETWDQML KLTSLEGFSS EKLKDQLLQK ALKEQLHEWL  720
LQKVAEGGKG PSVLDEGGQG VLHFAAALGY EWALEPTIVA GVSVNFRDVN GWTALHWAAY  780
YGRERTVASL IHLGAAPGAI TDPTPKYPTG RTPADLASAN GHKGISGFLA ESALSAHLSS  840
LNLEKQDGDA AESSGIPASL TVSDCNETPV KDADIPIGLS LKDSLAAVCN ATQAAARIHQ  900
VFRVQSFQKK QLKEYGDDKF GMSHERALSL IAVKSQKAGQ YDEPVHAAIR IQNKFRGWKG  960
RKEFLIIRQR IVKIQAHVRG HQVRKNYRKI IWSVGILDKI ILRWRRKGSG LRGFKSEALT  1020
EGSSMQVVSS KDDDDDFLKE GRKQTEERSQ IALARVKSMH QHPEAREQYH RLRNVVAEIQ  1080
ETKAMYEWAN NSEAMVEFDD LINLETLWDG DTFLPTDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031016.1	0.0	PREDICTED: calmodulin-binding transcription activator 3-like isoform X1
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A2K2AD13	0.0	A0A2K2AD13_POPTR; Uncharacterized protein
STRING	POPTR_0007s05410.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8284	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]