PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023473.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 343aa    MW: 38255.7 Da    PI: 6.5124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023473.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.2e-21170220256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+++taeeAa a+++a+ kl+ge
  CCG023473.1 170 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTYDTAEEAALAYDNAAYKLRGE 220
                  59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.85E-34169229No hitNo description
SMARTSM003809.9E-38170233IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-23170228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-32170228IPR001471AP2/ERF domain
PROSITE profilePS5103223.261170227IPR001471AP2/ERF domain
PfamPF008471.1E-14171220IPR001471AP2/ERF domain
PRINTSPR003677.0E-11171182IPR001471AP2/ERF domain
PRINTSPR003677.0E-11193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAAAIDIYNT TVPVFSDPCR EELMKALEPF MKSASPPPTS TYSSPSPSTS PPFSSYPSCF  60
YNNNSPISSY PNLDLSFCSP TSTQMFSNGF LDYNQMGFEQ TGPIGLNHLT PSQILQIQAK  120
IHFQQQQQQK MENLATTSQC VHNRKASNYL APKPVPMKQS GASPQKPTKL YRGVRQRHWG  180
KWVAEIRLPK NRTRLWLGTY DTAEEAALAY DNAAYKLRGE YARLNFPHLR HQGAHGKTRE  240
PSSVANSKKT ATAPLQAKIE DDCSMRGELK TEYENFGVED YKVEIPSPSP SPSPASSDES  300
VAGSSSPESE ISFLDFPGSL HWDEFENFGL EKYPSVEIDW SSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-21169227160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5974990.0EF597499.1 Populus euphratica dehydrate responsive element-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307098.10.0ethylene-responsive transcription factor RAP2-4
TrEMBLD2CKB50.0D2CKB5_POPEU; Dehydrate responsive element-binding protein
STRINGPOPTR_0005s07900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-49ERF family protein
Publications ? help Back to Top
  1. Zhou ML, et al.
    Improvement of drought and salt tolerance in Arabidopsis and Lotus corniculatus by overexpression of a novel DREB transcription factor from Populus euphratica.
    Gene, 2012. 506(1): p. 10-7
    [PMID:22771912]