PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023456.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HB-other | ||||||||
Protein Properties | Length: 334aa MW: 37252.9 Da PI: 6.8618 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.7 | 3.4e-07 | 14 | 74 | 7 | 55 |
--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 f +++++e+e+ ++ n p +e LA+k +++ +qV +WFqNrR+ CCG023456.2 14 FMQNEVTEMEAILQEhnNTMPAREVLVSLAEKFsespdrkgniQVQMKQVWNWFQNRRYAI 74 778889999999996558999********************99***************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.07E-9 | 4 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0061 | 11 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.75 | 13 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-7 | 13 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 0.0033 | 13 | 75 | No hit | No description |
Pfam | PF00046 | 1.0E-4 | 14 | 74 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 1.3E-41 | 134 | 261 | IPR032001 | SAWADEE domain |
CDD | cd00024 | 0.00471 | 148 | 180 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGRPPSNGGP SFRFMQNEVT EMEAILQEHN NTMPAREVLV SLAEKFSESP DRKGNIQVQM 60 KQVWNWFQNR RYAIRAKSNK TPMKLNITPM PRDDLVAARG LPQQVAAPIP VAVPATTPAS 120 SAAGAGRATS ENSYMEFEAK SARDGAWYDV GTFLSHRYLD KGDPEVLVRF AGFGPDEDEW 180 LNVCRQVRQR SLPCEASECV AVLPGDLILC FQEGKDQALY FDAHVLDAQR RRHDVRGCRC 240 RFLVRYDHDQ SEEIVPLRKI CRRPETDYRL LQLHAANDSA ANDQKEASVD PSTANAQRVA 300 ASALETTQQQ QHNSDGAMAV LASQANVSQP VKTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 2e-46 | 135 | 265 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 2e-46 | 135 | 265 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 2e-46 | 135 | 265 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 2e-46 | 135 | 265 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 2e-46 | 135 | 265 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 2e-46 | 135 | 265 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 2e-46 | 135 | 265 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 2e-46 | 135 | 265 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 2e-46 | 135 | 265 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 2e-46 | 135 | 265 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008295.1 | 0.0 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-148 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A2K1YHZ2 | 0.0 | A0A2K1YHZ2_POPTR; Uncharacterized protein | ||||
STRING | EOY13134 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6816 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-128 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |