PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023456.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 334aa    MW: 37252.9 Da    PI: 6.8618
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023456.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.73.4e-071474755
                 --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
     Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                 f +++++e+e+  ++  n  p +e    LA+k           +++ +qV +WFqNrR+  
  CCG023456.2 14 FMQNEVTEMEAILQEhnNTMPAREVLVSLAEKFsespdrkgniQVQMKQVWNWFQNRRYAI 74
                 778889999999996558999********************99***************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-9479IPR009057Homeodomain-like
SMARTSM003890.00611181IPR001356Homeobox domain
PROSITE profilePS500719.751377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-71381IPR009057Homeodomain-like
CDDcd000860.00331375No hitNo description
PfamPF000461.0E-41474IPR001356Homeobox domain
PfamPF167191.3E-41134261IPR032001SAWADEE domain
CDDcd000240.00471148180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFMQNEVT EMEAILQEHN NTMPAREVLV SLAEKFSESP DRKGNIQVQM  60
KQVWNWFQNR RYAIRAKSNK TPMKLNITPM PRDDLVAARG LPQQVAAPIP VAVPATTPAS  120
SAAGAGRATS ENSYMEFEAK SARDGAWYDV GTFLSHRYLD KGDPEVLVRF AGFGPDEDEW  180
LNVCRQVRQR SLPCEASECV AVLPGDLILC FQEGKDQALY FDAHVLDAQR RRHDVRGCRC  240
RFLVRYDHDQ SEEIVPLRKI CRRPETDYRL LQLHAANDSA ANDQKEASVD PSTANAQRVA  300
ASALETTQQQ QHNSDGAMAV LASQANVSQP VKTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461352654134SHH1 SAWADEE
4iur_B2e-461352654134SHH1 SAWADEE
4iut_A2e-461352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461352654134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461352654134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008295.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-148SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K1YHZ20.0A0A2K1YHZ2_POPTR; Uncharacterized protein
STRINGEOY131340.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-128sequence-specific DNA binding transcription factors;sequence-specific DNA binding