PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023235.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 270aa    MW: 31316.4 Da    PI: 7.6845
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023235.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.2e-36251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sw ++++sfvv+ + ef++++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F++g k+ll++i+
   CCG023235.1  25 FLTKTYQLVDDPLTDHIVSWGDDETSFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANENFRRGAKHLLSEIH 112
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   CCG023235.1 113 RRKTS 117
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3816108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-5821114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAFTVDRCEE MVFTVESQKA VPAPFLTKTY QLVDDPLTDH IVSWGDDETS FVVWRPPEFS  60
RDLLPNYFKH NNFSSFVRQL NTYGFKKVVA DRWEFANENF RRGAKHLLSE IHRRKTSQHH  120
HQHYPEQPPR FFQPEDGFSW IDPPFQSPKP STDILTALSE DNQRLRRKNC MLLSELSHMK  180
NLYNDIIYFI QNHVKPMPYE QKAYNAAPKL IELGSSCQDQ TTCSSIQRAK NGTVLGQHSL  240
TLSTEESTSP VKLFGVPLSG NKRLRPEVID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-222111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140080.0KP014008.1 Populus simonii heat shock transcription factor B4a (HsfB4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024992.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-89HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0N7DMK50.0A0A0N7DMK5_9ROSI; Heat shock transcription factor B4a
STRINGPOPTR_0001s28040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-85heat shock transcription factor B4