PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023213.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SRS

Protein Properties

Length: 364aa MW: 37840.7 Da PI: 8.017

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023213.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211	2.9e-65	148	307	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 s t++C+dCGnqakkdC+h+RCRtCCksrgfdCathvkstWv+aa+rrerq a+a a ++ +++ sk++r +++++++s+t++s+++++++ CCG023213.1 148 SATTTCEDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVAAARRRERQLI-ATAGGGAGSTGSTSGSKKPRLI-NSQTTTTSHTSTSNTTPPRSY 243 57899******************************************9655.4555666777788999999975.788899999********** PP DUF702 101 etss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +tss lP +v ++avfrcvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ CCG023213.1 244 DTSSshqdagfkerLPVQVTAPAVFRCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVET 307 9999*******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.5E-60	150	306	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-25	152	194	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.6E-29	257	305	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
IGMVGLRDVF VVAPAAPFQH HPHPPHPPPP HQHNEQINLS TADPINASNA TALGVGVGVG 60 VIPLLTSAPC LTPQNMDDQD LLHNGRNKIG GIHQFWQNQG SQYIKKASDT TPSIIDHHNN 120 SSTANLLLQS GSGGGNGSGN LGGNSSSSAT TTCEDCGNQA KKDCSHRRCR TCCKSRGFDC 180 ATHVKSTWVA AARRRERQLI ATAGGGAGST GSTSGSKKPR LINSQTTTTS HTSTSNTTPP 240 RSYDTSSSHQ DAGFKERLPV QVTAPAVFRC VRVTAVEDGE DEYAYQAVVK IGGHVFKGFL 300 YDQGVETRDG FPNISELHLG AANGGGGGTG RHGASSTPIL DPSDVYGASA GGFLGGSAFG 360 NPIN

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

IGMVGLRDVF VVAPAAPFQH HPHPPHPPPP HQHNEQINLS TADPINASNA TALGVGVGVG  60
VIPLLTSAPC LTPQNMDDQD LLHNGRNKIG GIHQFWQNQG SQYIKKASDT TPSIIDHHNN  120
SSTANLLLQS GSGGGNGSGN LGGNSSSSAT TTCEDCGNQA KKDCSHRRCR TCCKSRGFDC  180
ATHVKSTWVA AARRRERQLI ATAGGGAGST GSTSGSKKPR LINSQTTTTS HTSTSNTTPP  240
RSYDTSSSHQ DAGFKERLPV QVTAPAVFRC VRVTAVEDGE DEYAYQAVVK IGGHVFKGFL  300
YDQGVETRDG FPNISELHLG AANGGGGGTG RHGASSTPIL DPSDVYGASA GGFLGGSAFG  360
NPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024965.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2
Swissprot	Q94CK9	3e-85	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2K2C4R4	0.0	A0A2K2C4R4_POPTR; Uncharacterized protein
STRING	POPTR_0001s28290.1	1e-172	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	4e-70	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]