PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023173.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 419aa    MW: 47284.9 Da    PI: 4.8894
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023173.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS111.88.8e-351483183181
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  ea + + +ela ++++rl+e a p g++++Rla y+ +AL+  +             ++++   s++  aa+k+f++++P+ +f+h+taN+
  CCG023173.1 148 HLLKAYGEAEEMETKELAGKIMSRLKEKACPFGSTVERLAYYMIQALEGEVDF----------LWKEA---SKNYEAAFKTFYQIFPYGRFAHFTANS 232
                  6666667777788899**********************************998..........23333...45566799******************* PP

         GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl 181
                   Ilea+ ++ ++vHi+Dfd++qG+QWp++++ La R++   ++ + g++ +e++      s+++ ee++ rL++ A+++g++++ + +
  CCG023173.1 233 VILEALPEDaDMVHIVDFDVGQGVQWPPMIEDLARRRKR--RVGLIGIKWQEEEdrsgvtSTRRSEEMKTRLNEHAKTFGLRLKMKEM 318
                  ******8777************************99765..78888888766667889999**********************99874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.102120419IPR005202Transcription factor GRAS
PfamPF035143.0E-32148318IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAEYLQSSRR SRGFFRNRDG QLSSHPDHSF SCISIEDFSD VSSSIPFSPV IHVDEPPSFP  60
ILVDDLPVEQ KCSLISESGI TLDDPVLMVH EMEDISDWLA SESSPPALNG DDAGSLLREV  120
SIGTLMNQTS LILPGTGMEF DNQLGILHLL KAYGEAEEME TKELAGKIMS RLKEKACPFG  180
STVERLAYYM IQALEGEVDF LWKEASKNYE AAFKTFYQIF PYGRFAHFTA NSVILEALPE  240
DADMVHIVDF DVGQGVQWPP MIEDLARRRK RRVGLIGIKW QEEEDRSGVT STRRSEEMKT  300
RLNEHAKTFG LRLKMKEMDK EALVTEMKKT KKRGARSEFS LQLQGVSGTR GIITIARESK  360
ALSEVGLQAW RMREDSLMEA KELIRETESF YCATIEGVKE NQPVLSYMGI PLVKVSSWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1315434927230Protein SCARECROW
5b3h_A2e-1315434926229Protein SCARECROW
5b3h_D2e-1315434926229Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1487950.0EF148795.1 Populus trichocarpa x Populus deltoides clone WS0138_A18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313234.30.0nodulation-signaling pathway 2 protein
TrEMBLA0A3N7GYN91e-163A0A3N7GYN9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07930.11e-180(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3956122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-16GRAS family protein