PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG023148.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 297aa MW: 32824.1 Da PI: 7.583

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG023148.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.6	7.3e-40	33	94	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss CCG023148.1 33 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNVPVGGGSRKNKRSSS 94 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	25	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.1E-34	34	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDTATQWAQG IGAVNPMEGS RSDVLERRAR PQKDQALNCP RCNSTNTKFC YYNNYSLSQP 60 RYFCKTCRRY WTAGGSLRNV PVGGGSRKNK RSSSTPSTSA AATAASKKFP LDLTQPNLPH 120 SASQNPKIHE GQDLNLAYPP SADDYSNLSE FVEIPFDTES NKTHHQNPNP SSTSPSHHHH 180 HDVSPMEFLK STAMNARGFS AFMSIPPLSD SNNTMFSAGF PLQEFKSTQN FSLEGLESGY 240 NNTQGVHETC SSARLLFPIE DLKQQVPSNS EFEQNTREQR DSAPAGYWNG MLGGGSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024882.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A2I4KKM7	0.0	A0A2I4KKM7_POPTR; Dof family protein
STRING	POPTR_0012s02570.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-42	Dof family protein