PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Nin-like | ||||||||
Protein Properties | Length: 261aa MW: 30428.9 Da PI: 6.3165 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.9 | 2.8e-25 | 153 | 200 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le+++++F++pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl CCG023130.1 153 LELEEIQRHFNMPITQAAREMKVGLTVLKKRCRELRIMRWPHRKIKSL 200 899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.722 | 131 | 221 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-22 | 153 | 200 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDSTRYQLIV PKMENPLDFD AWVLDGQDIF SKISELPPLE SLFEPLNLPP FVPYDKNFNG 60 FKNNEDISND NIFSESNLDS WYNRENVIDT KPVINPGIQY PSYSLNLDNS VIKSELLNEV 120 SMMLVQSDCA SSSSMKEEEE VRKMSGRKRS VGLELEEIQR HFNMPITQAA REMKVGLTVL 180 KKRCRELRIM RWPHRKIKSL TSLINNVKEM GLSEYEAIML EEHKRLIEEL PDLELTERTK 240 KLRQACFKAN YKKRRLSAAY S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024851.1 | 0.0 | PREDICTED: protein RKD4-like | ||||
TrEMBL | B9I1X3 | 1e-160 | B9I1X3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02390.1 | 1e-161 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 5e-41 | RWP-RK domain-containing protein |