PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023103.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 122aa    MW: 13807.3 Da    PI: 10.6949
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023103.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14495191
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                 f k+l p d  k  rl++p k++ ++    +g     ++ +  d +g +W++k+++rkk++    vl+kGW  Fv +++Lk+gD v F++++++++ 
  CCG023103.1  4 FSKILRPTDIYK--RLSVPTKYL-KYlpsfEGG--HAVDFQAVDDKGHVWTFKCSVRKKGQYpkPVLAKGWLPFVASKNLKAGDKVKFYREKNKSAA 95
                 556665555554..69******9.677987333..46789999***********9999999899*************************98885443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-15399IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-203103No hitNo description
Gene3DG3DSA:2.40.330.107.0E-21399IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.3E-104104IPR003340B3 DNA binding domain
PfamPF023623.2E-12594IPR003340B3 DNA binding domain
PROSITE profilePS508638.76916102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MASFSKILRP TDIYKRLSVP TKYLKYLPSF EGGHAVDFQA VDDKGHVWTF KCSVRKKGQY  60
PKPVLAKGWL PFVASKNLKA GDKVKFYREK NKSAAKHVYK VQVAKEVRIF GAIFGYAPIL  120
AP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318411.17e-79B3 domain-containing transcription factor NGA4
TrEMBLB9I5A62e-77B9I5A6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02100.13e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-10B3 family protein