PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 13703.2 Da PI: 10.9754 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 4 | 98 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 f k+l++ dv k rl++p k++++ +g+ + ++ + +desg +W +k++ r+++ vlt+GW Fv ++Lk+gD v F+ ++ ++ + CCG023102.1 4 FAKILSKTDVQK--RLSVPTKYLSSLpsfNGD--RAVEFQAMDESGCVWAFKCSTRRTRHPkPVLTRGWLAFVACKNLKAGDKVAFYKLKNkCRA--ATH 97 789997777776..59*******999*87555..7889***************7655544479************************55552333..444 PP E CS B3 96 v 96 v CCG023102.1 98 V 98 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.079 | 2 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 8.63E-15 | 4 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-12 | 4 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.6E-18 | 4 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.30E-18 | 4 | 100 | No hit | No description |
SMART | SM01019 | 1.1E-6 | 4 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MENFAKILSK TDVQKRLSVP TKYLSSLPSF NGDRAVEFQA MDESGCVWAF KCSTRRTRHP 60 KPVLTRGWLA FVACKNLKAG DKVAFYKLKN KCRAATHVCK VRVAKQVKIF GSVFGHSPIR 120 AP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025075.1 | 1e-86 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A3N7FU95 | 2e-83 | A0A3N7FU95_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02080.1 | 1e-66 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-08 | B3 family protein |