PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 124aa MW: 14144.6 Da PI: 10.68 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.1 | 2.8e-12 | 6 | 89 | 3 | 86 |
EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 k lt+ d +r++lp k+++ +g++ + + desg +W+++++ rkk+ vl+kGW Fv+ ++Lk+gD v F ++ CCG023101.1 6 KLLTKTDIR--KRFSLPTKCFKPLpslKGSHVR--DFPAIDESGFVWTFQCSTRKKGHPkPVLSKGWLAFVRHKELKVGDRVKFFKEK 89 555444433..458*****99888977555555..68889***********765554447**********************997444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 2.59E-14 | 4 | 92 | No hit | No description |
SuperFamily | SSF101936 | 6.67E-13 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-15 | 4 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 7.5E-9 | 6 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MAEFSKLLTK TDIRKRFSLP TKCFKPLPSL KGSHVRDFPA IDESGFVWTF QCSTRKKGHP 60 KPVLSKGWLA FVRHKELKVG DRVKFFKEKD QSGPATPFYR VEAEKEIKIF GVIFGYSPIV 120 APSP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025074.1 | 9e-86 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | B9I5A0 | 5e-79 | B9I5A0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s02040.1 | 9e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 8e-08 | B3 family protein |