PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022968.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 449aa    MW: 49989.6 Da    PI: 4.9041
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022968.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS286.28.9e-88454422373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lLl+cA a++++d +laq++++ l++ as  gdp+qRl++ f++AL +r ++ +++ ++   +s+ +++n+s +     +++++ P+++f++ + N
  CCG022968.1  45 EKLLLHCASALEHNDGTLAQQVMWVLNNVASLVGDPNQRLTSWFLKALISRASKVCPTAMNFDGSSTIRRRNMSVTEL--AVYVDLIPWHRFGFCASN 140
                  689***************************************************999999877777777666554433..469*************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............. 181
                  +aIl+a+eg ++vHi+Df+i++++QWp+L++aLa RpegppslRiT+ +   ++    + + ee+g rL++fA+  +vpfefnv+             
  CCG022968.1 141 SAILKAIEGYSKVHIVDFSITHCMQWPTLIDALAIRPEGPPSLRITVPSCRPPVppfLNVSCEEVGLRLSNFAKYRDVPFEFNVFdhdpssfasseim 238
                  **********************************************97775555668999************************************99 PP

         GRAS 182 .........vakrledleleeLrvkpgEalaVnlvlqlhrllde....svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                            ++ l+ l++ +L+++ +Eal++n++  l +l de    sv+ +s rd++L +vk+ +P +vvvv++++d++++s+  r++ ++++ + 
  CCG022968.1 239 sqesshdfhFESLLNHLTPTMLDLRDDEALVINCQNWLRYLSDEekgnSVQDSSLRDAFLCTVKGFNPCIVVVVDEDSDLSAPSLSSRITTCFNFLWI 336
                  9888877755557788899999*******************98722214455569******************************************* PP

         GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                   fd+le+ l ++s++ri +E   +g +i+n+++ ega+r+er e+  k  +r+++aGF++vp+ e++  ++++ll++++ ++g++ e e++ lvl+Wk
  CCG022968.1 337 PFDALETFLLKDSSQRIEYESD-IGHKIENIISFEGAQRIERLESGIKLAQRMKNAGFSSVPFCEDTIGEVRSLLEEHAsGWGMKTE-EDHMLVLTWK 432
                  **********************.********************************************************77776665.567899**** PP

         GRAS 364 drpLvsvSaW 373
                  +++ v+ +aW
  CCG022968.1 433 GHNSVFSTAW 442
                  ********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.75718423IPR005202Transcription factor GRAS
PfamPF035143.1E-8545442IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MKTELRGNSN ASISLQNPSL FNNPQSSLSG ALNGCLGSLD GACIEKLLLH CASALEHNDG  60
TLAQQVMWVL NNVASLVGDP NQRLTSWFLK ALISRASKVC PTAMNFDGSS TIRRRNMSVT  120
ELAVYVDLIP WHRFGFCASN SAILKAIEGY SKVHIVDFSI THCMQWPTLI DALAIRPEGP  180
PSLRITVPSC RPPVPPFLNV SCEEVGLRLS NFAKYRDVPF EFNVFDHDPS SFASSEIMSQ  240
ESSHDFHFES LLNHLTPTML DLRDDEALVI NCQNWLRYLS DEEKGNSVQD SSLRDAFLCT  300
VKGFNPCIVV VVDEDSDLSA PSLSSRITTC FNFLWIPFDA LETFLLKDSS QRIEYESDIG  360
HKIENIISFE GAQRIERLES GIKLAQRMKN AGFSSVPFCE DTIGEVRSLL EEHASGWGMK  420
TEEDHMLVLT WKGHNSVFST AWVPNGSQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B5e-551744565475Protein SHORT-ROOT
5b3h_B2e-5574451421Protein SHORT-ROOT
5b3h_E2e-5574451421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003240.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A2K1ZT440.0A0A2K1ZT44_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02880.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-125GRAS family protein