PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 449aa MW: 49989.6 Da PI: 4.9041 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 286.2 | 8.9e-88 | 45 | 442 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lLl+cA a++++d +laq++++ l++ as gdp+qRl++ f++AL +r ++ +++ ++ +s+ +++n+s + +++++ P+++f++ + N CCG022968.1 45 EKLLLHCASALEHNDGTLAQQVMWVLNNVASLVGDPNQRLTSWFLKALISRASKVCPTAMNFDGSSTIRRRNMSVTEL--AVYVDLIPWHRFGFCASN 140 689***************************************************999999877777777666554433..469*************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............. 181 +aIl+a+eg ++vHi+Df+i++++QWp+L++aLa RpegppslRiT+ + ++ + + ee+g rL++fA+ +vpfefnv+ CCG022968.1 141 SAILKAIEGYSKVHIVDFSITHCMQWPTLIDALAIRPEGPPSLRITVPSCRPPVppfLNVSCEEVGLRLSNFAKYRDVPFEFNVFdhdpssfasseim 238 **********************************************97775555668999************************************99 PP GRAS 182 .........vakrledleleeLrvkpgEalaVnlvlqlhrllde....svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 ++ l+ l++ +L+++ +Eal++n++ l +l de sv+ +s rd++L +vk+ +P +vvvv++++d++++s+ r++ ++++ + CCG022968.1 239 sqesshdfhFESLLNHLTPTMLDLRDDEALVINCQNWLRYLSDEekgnSVQDSSLRDAFLCTVKGFNPCIVVVVDEDSDLSAPSLSSRITTCFNFLWI 336 9888877755557788899999*******************98722214455569******************************************* PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 fd+le+ l ++s++ri +E +g +i+n+++ ega+r+er e+ k +r+++aGF++vp+ e++ ++++ll++++ ++g++ e e++ lvl+Wk CCG022968.1 337 PFDALETFLLKDSSQRIEYESD-IGHKIENIISFEGAQRIERLESGIKLAQRMKNAGFSSVPFCEDTIGEVRSLLEEHAsGWGMKTE-EDHMLVLTWK 432 **********************.********************************************************77776665.567899**** PP GRAS 364 drpLvsvSaW 373 +++ v+ +aW CCG022968.1 433 GHNSVFSTAW 442 ********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 43.757 | 18 | 423 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-85 | 45 | 442 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MKTELRGNSN ASISLQNPSL FNNPQSSLSG ALNGCLGSLD GACIEKLLLH CASALEHNDG 60 TLAQQVMWVL NNVASLVGDP NQRLTSWFLK ALISRASKVC PTAMNFDGSS TIRRRNMSVT 120 ELAVYVDLIP WHRFGFCASN SAILKAIEGY SKVHIVDFSI THCMQWPTLI DALAIRPEGP 180 PSLRITVPSC RPPVPPFLNV SCEEVGLRLS NFAKYRDVPF EFNVFDHDPS SFASSEIMSQ 240 ESSHDFHFES LLNHLTPTML DLRDDEALVI NCQNWLRYLS DEEKGNSVQD SSLRDAFLCT 300 VKGFNPCIVV VVDEDSDLSA PSLSSRITTC FNFLWIPFDA LETFLLKDSS QRIEYESDIG 360 HKIENIISFE GAQRIERLES GIKLAQRMKN AGFSSVPFCE DTIGEVRSLL EEHASGWGMK 420 TEEDHMLVLT WKGHNSVFST AWVPNGSQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 5e-55 | 17 | 445 | 65 | 475 | Protein SHORT-ROOT |
5b3h_B | 2e-55 | 7 | 445 | 1 | 421 | Protein SHORT-ROOT |
5b3h_E | 2e-55 | 7 | 445 | 1 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003240.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
TrEMBL | A0A2K1ZT44 | 0.0 | A0A2K1ZT44_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s02880.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10074 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-125 | GRAS family protein |