PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022963.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 112aa    MW: 12774.7 Da    PI: 8.4819
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022963.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.42e-1136973290
                 --SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
           B3 32 esktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90
                 + +    +d++g++We+kl+ r++++    v+++ W +Fv+++gL ++D+++++++ + +++
  CCG022963.1 36 NAVSFNARDPTGKVWEFKLCTRNHGRYkkPVIRGEWLDFVREKGLTVNDSIILTMVADaENG 97
                 34567889***********98777665779************************88764444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-102295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-112895IPR015300DNA-binding pseudobarrel domain
CDDcd100173.76E-103491No hitNo description
PfamPF023628.9E-93697IPR003340B3 DNA binding domain
PROSITE profilePS508638.86843108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MEFELMNKQL TSADLECCLA YTTANLWAFQ MVQGQNAVSF NARDPTGKVW EFKLCTRNHG  60
RYKKPVIRGE WLDFVREKGL TVNDSIILTM VADAENGVSY NIRVKPNTKL AI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003253.11e-61PREDICTED: uncharacterized protein LOC105110050
TrEMBLB9HE553e-65B9HE55_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02840.16e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14473313