PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022886.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 466aa    MW: 51943.9 Da    PI: 9.0947
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022886.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.14e-171899186
     trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                 +Wt++e laLi+a+r+++ +++rg+l+ ++We+v++++      +s+ qC++k+e+l+kry+++k+   k   + ss++ +f  l+
  CCG022886.1 18 CWTQEESLALIKAYRDKWYSVNRGNLRVADWEAVAIAVPL----KSSLQCRHKIEKLRKRYRAEKQKCLKYPGRFSSSWDLFPLLD 99
                 8***********************************9974....799*******************99999899999999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-1417101No hitNo description
PROSITE profilePS500906.5041971IPR017877Myb-like domain
CDDcd001675.71E-51970No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MSTAPSSDFT TKRVPPPCWT QEESLALIKA YRDKWYSVNR GNLRVADWEA VAIAVPLKSS  60
LQCRHKIEKL RKRYRAEKQK CLKYPGRFSS SWDLFPLLDS MEIGSLGSKV EQEFDKGNDA  120
GDGICVKTLG DRNLLTAQKN GKINGDLDPD FALRARKYSK VDGGFNISKD SGSGFGVSSV  180
AFRPNDYVGV NGNIKANVGF PCDHGGEVGY KMEKTQGDRR FMPQGVRLPD HGMMADHYGS  240
YNSDFSKGVD VYEGFPLKSL GDRNLPMQGL NPKNYKNIDR KPTPYFCDDD HVEIDYRIDK  300
RDRLGKKVND GWSSSFPGFI PNNCGNIDGK SRSDSRSRAL KGSVNVETNG NGDGVKREAD  360
SVALLVSAIE QATESFVRVE MMKMDMAMEI EKMRMEMGLK HNQMILESQQ QIVDALAKAM  420
LEKKKRRKVE VLSSNSNRNG YAQVAAVDCE SIGKSSIVKE SEACVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422426KKKRR
2422427KKKRRK
3423427KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031982.10.0PREDICTED: uncharacterized protein LOC105130945
TrEMBLA0A3N7EUY10.0A0A3N7EUY1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137971421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-31Trihelix family protein