PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022823.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 275aa    MW: 30499.1 Da    PI: 5.5132
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022823.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-192674355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  CCG022823.1 26 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 74
                 56******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-342588IPR001471AP2/ERF domain
CDDcd000183.39E-312581No hitNo description
PROSITE profilePS5103220.7192582IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-212683IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.2E-292682IPR001471AP2/ERF domain
PRINTSPR003673.4E-82637IPR001471AP2/ERF domain
PfamPF008476.1E-122874IPR001471AP2/ERF domain
PRINTSPR003673.4E-84864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNPSSSKSKR KQPQQVQQEP GTGLRFLGVR RRPWGRYAAE IRDPSTKERH WLGTFDTAEE  60
AALAYDRAAR SMRGSRARTN FVYSDMPAGS SVTSIISPDD QQSLQQQQFQ QNSDHNNNLS  120
SLFFNARPPS HDLQPDSTPI FNQDFNSQCH LSDGFSSMTS GGDFWCCSST RTENQQPQHV  180
NDYNVLPHEF PSHISHDSGY SMGQCGSTDS SSSRLMGFED QTAMITGFDS VGGGSGSYFG  240
FDSGEYVHSP LFSRMPPVSD MAPDGFDLSS SAYFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-202681359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-202381362ATERF1
3gcc_A3e-202381362ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031896.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A3N7G2C01e-172A0A3N7G2C0_POPTR; Uncharacterized protein
STRINGPOPTR_0003s07540.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.12e-27ERF family protein