PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022819.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 333aa    MW: 37135.5 Da    PI: 6.0373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022819.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063269291123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F +   L  H r+H
  CCG022819.1 269 FECPYCFKVFGSGQALGGHKRSH 291
                  89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.11426IPR015880Zinc finger, C2H2-like
PfamPF139127.0E-7428IPR007087Zinc finger, C2H2
PROSITE profilePS501578.912431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576677.68E-7226291No hitNo description
PROSITE profilePS501579.058226256IPR007087Zinc finger, C2H2
SMARTSM0035554226246IPR015880Zinc finger, C2H2-like
SMARTSM003550.15269291IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681269291IPR007087Zinc finger, C2H2
PfamPF139122.4E-11269292IPR007087Zinc finger, C2H2
PROSITE patternPS000280271291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEKHKCKLCV RTFPNGRALG GHMKAHLAAT RQQLGGLDRN ESFSSSYSSS SGEEEVKEEQ  60
EIVKNREMVE EKSSLAYGLR ENPKKSFRLA DPEFSFTVDA GSVVVQDRES ETESRNPTRR  120
RSKRIRKSCG FGDNQKQGID VNKVVDLKNP SWVESSSPAE PEPVSSVSDT SPEEDVARCL  180
MMLSRDVWMR NIEEEYEEQG GKDGERSVEM LEEAEEIKVS KTRGKFRCEK CMKLFRSSRA  240
LSGHKRICSL NATEVRRFAG SADANDRIFE CPYCFKVFGS GQALGGHKRS HLIGSSTSTS  300
GVVEASTKLE NNLIDLNLPA PVEDDEFSVV SDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031881.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A2I4KL000.0A0A2I4KL00_POPTR; C2H2 family protein
STRINGPOPTR_0001s15790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-46C2H2-like zinc finger protein