PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022702.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 155aa MW: 17354.6 Da PI: 8.4767 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 14 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +ykGVr +k +g+WvAeIr + r r++lg++ taeeAa+a++aa ++l+g+ CCG022702.1 14 RYKGVRMRK-WGKWVAEIRQR---NSRDRIWLGSYNTAEEAARAYDAAVLCLRGP 64 69*****99.*******9993...335*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-30 | 14 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-34 | 14 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-22 | 14 | 73 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.273 | 14 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-15 | 14 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.09E-28 | 14 | 71 | No hit | No description |
PRINTS | PR00367 | 5.8E-10 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-10 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MVRERRERGD DNGRYKGVRM RKWGKWVAEI RQRNSRDRIW LGSYNTAEEA ARAYDAAVLC 60 LRGPSATFNF PTNIPEIPAS TDQVLSPMQI REVASRHARR GSTVELAERI VGPGLCEVPS 120 GRSGEVYLGA AENMEECLEG IFSGAHYQTP GVWTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 9 | 71 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155956 | 0.0 | EF155956.1 Populus trichocarpa RAP2-like protein (RAP2L15) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011016480.1 | 1e-111 | PREDICTED: ethylene-responsive transcription factor ERF016-like | ||||
Swissprot | Q9C591 | 1e-33 | ERF16_ARATH; Ethylene-responsive transcription factor ERF016 | ||||
TrEMBL | A9PLA5 | 1e-102 | A9PLA5_POPTR; ERF family protein | ||||
STRING | POPTR_0018s00700.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15296 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 1e-27 | ERF family protein |