PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022614.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 264aa    MW: 29148.3 Da    PI: 8.6958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022614.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-1175121354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L  +++ +++L
  CCG022614.1  75 KSHSEAERRRRERINAHLATLRGLVPCT-----EKMDKATLLAAVINQVNEL 121
                  58*************************8.....7********9988866655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.95872121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-975120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1276123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1276124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-1078127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.39E-4160228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MFDYCFNANS SSGSGYMNTF DPFPRSLEGF SDVLQGRPKV SQTLVLDAEM GELVKAPARV  60
GNKGISEAKA LAALKSHSEA ERRRRERINA HLATLRGLVP CTEKMDKATL LAAVINQVNE  120
LKRNALEACK GLLIPTADDE VKVDTYFDGT KEGTLYFKAS ICCDYRPELL SDIRQAVDAL  180
PLKMVNAEIS TLGSRLKNEF VFTNNRYKNA VVDAEAMQLL TKSIHHALTS VLEKGSASLE  240
YFPRTTLPNK KRRVTFLDSS SSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142840.0AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005482.10.0PREDICTED: transcription factor bHLH106-like
TrEMBLB9H2J01e-165B9H2J0_POPTR; Uncharacterized protein
STRINGXP_002522566.11e-112(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-32bHLH family protein