PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022585.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 795aa MW: 89121.4 Da PI: 4.8164 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 369.5 | 4.4e-113 | 418 | 792 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avs++d++ a++lL+++++++s+ gd +qRla++f+++L+arla+s++++ + ++ ++++++ ++ l+a+k+ +++P+ k+s + a CCG022585.2 418 LRTLLILCAQAVSANDFRTANELLKQIRQHSSQFGDGTQRLAHFFANGLEARLAGSGDGTRSFFTHLASKRTTAADMLKAYKTNLQACPFKKLSIFFA 515 5789********************************************************************************************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 ++Il+a+e+++++Hi+Df++ +G+QWp L+q+L+ p+gpp+lR+Tg++ p++g +e++eetg+rLak++e+++vpfe+n+++a+++e + +e+L CCG022585.2 516 ISMILQAAEKATTLHIVDFGVLYGFQWPILIQQLSLFPNGPPKLRLTGIELPQHGfrPSERIEETGRRLAKYCERFKVPFEYNPIAAQNWERIPIEDL 613 ******************************************************9******************************************* PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++ +E+laVn++ + ++l+de+v+++ +++++L+l+++++P+++v++ + ++n++ Fl+rf eal ++s+lfd+++++lpre+++ri+ E el gr CCG022585.2 614 KINGNEVLAVNCQCRFKNLFDETVEVDCPKNAILNLIRKMNPDIFVHTIMNGSYNAPFFLTRFREALFHFSSLFDMFDSTLPREDQARIMFEGELYGR 711 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +++nvvaceg+er+er et+++W++r +aGFk++pl++k +++ + l++++ + + ++e+s+++++gWk+r +++ S+W CCG022585.2 712 DAMNVVACEGQERVERPETYKQWQARTLRAGFKTLPLDQKLMTKFRGKLKTYYHKDFVIDEDSDWMLQGWKGRIIYASSCW 792 *****************************************************889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.634 | 392 | 773 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-110 | 418 | 792 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 795 aa Download sequence Send to blast |
MDQKYTGFFD HYQNDSKFDE TIMLPNSEQY PNIEYGLEFS IPSPDLSFIN LPFDPPRTHP 60 DSFGLSFNSS PGVESFVPTT SLSPDGEALD PSSAWSPEAE ASSPSEDSDS SDPLLKYISQ 120 MLMEENMEDQ PHMFHDHFAL STTEKSLYDV LGEQYPSSLD SPRSYVNLES PDSIFLASGS 180 NCGDNTSKST SAGTTSGAID SAKETQWVGG DVAGGNPSFS RTPLPDDNHI QSNFQPNVQF 240 TGNPSNGFTD AGDGLMGSSA GEMVQNMFSD AESVLQFKRG LEEASKFLPI ASQLVIDLET 300 NAVSSRQNED APIVVVKEEN SERDSSPDGS RGRKNHERED PDLEEGRRNK QSAVHVEESE 360 LSEMFDKVLL WTGGHCCGDD AVQDVASRNS QPDEQSNGSR GGKTRAKRQN KKKETVDLRT 420 LLILCAQAVS ANDFRTANEL LKQIRQHSSQ FGDGTQRLAH FFANGLEARL AGSGDGTRSF 480 FTHLASKRTT AADMLKAYKT NLQACPFKKL SIFFAISMIL QAAEKATTLH IVDFGVLYGF 540 QWPILIQQLS LFPNGPPKLR LTGIELPQHG FRPSERIEET GRRLAKYCER FKVPFEYNPI 600 AAQNWERIPI EDLKINGNEV LAVNCQCRFK NLFDETVEVD CPKNAILNLI RKMNPDIFVH 660 TIMNGSYNAP FFLTRFREAL FHFSSLFDMF DSTLPREDQA RIMFEGELYG RDAMNVVACE 720 GQERVERPET YKQWQARTLR AGFKTLPLDQ KLMTKFRGKL KTYYHKDFVI DEDSDWMLQG 780 WKGRIIYASS CWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-46 | 401 | 794 | 1 | 379 | Protein SCARECROW |
5b3h_D | 4e-46 | 401 | 794 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC208932 | 0.0 | AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035288.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_011035289.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2K2C2W0 | 0.0 | A0A2K2C2W0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s24860.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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