PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022585.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 795aa    MW: 89121.4 Da    PI: 4.8164
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022585.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.54.4e-1134187921373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+avs++d++ a++lL+++++++s+ gd +qRla++f+++L+arla+s++++ + ++  ++++++ ++ l+a+k+  +++P+ k+s + a
  CCG022585.2 418 LRTLLILCAQAVSANDFRTANELLKQIRQHSSQFGDGTQRLAHFFANGLEARLAGSGDGTRSFFTHLASKRTTAADMLKAYKTNLQACPFKKLSIFFA 515
                  5789********************************************************************************************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                   ++Il+a+e+++++Hi+Df++ +G+QWp L+q+L+  p+gpp+lR+Tg++ p++g   +e++eetg+rLak++e+++vpfe+n+++a+++e + +e+L
  CCG022585.2 516 ISMILQAAEKATTLHIVDFGVLYGFQWPILIQQLSLFPNGPPKLRLTGIELPQHGfrPSERIEETGRRLAKYCERFKVPFEYNPIAAQNWERIPIEDL 613
                  ******************************************************9******************************************* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++ +E+laVn++ + ++l+de+v+++ +++++L+l+++++P+++v++  + ++n++ Fl+rf eal ++s+lfd+++++lpre+++ri+ E el gr
  CCG022585.2 614 KINGNEVLAVNCQCRFKNLFDETVEVDCPKNAILNLIRKMNPDIFVHTIMNGSYNAPFFLTRFREALFHFSSLFDMFDSTLPREDQARIMFEGELYGR 711
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +++nvvaceg+er+er et+++W++r  +aGFk++pl++k +++ +  l++++ + + ++e+s+++++gWk+r +++ S+W
  CCG022585.2 712 DAMNVVACEGQERVERPETYKQWQARTLRAGFKTLPLDQKLMTKFRGKLKTYYHKDFVIDEDSDWMLQGWKGRIIYASSCW 792
                  *****************************************************889************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.634392773IPR005202Transcription factor GRAS
PfamPF035141.5E-110418792IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MDQKYTGFFD HYQNDSKFDE TIMLPNSEQY PNIEYGLEFS IPSPDLSFIN LPFDPPRTHP  60
DSFGLSFNSS PGVESFVPTT SLSPDGEALD PSSAWSPEAE ASSPSEDSDS SDPLLKYISQ  120
MLMEENMEDQ PHMFHDHFAL STTEKSLYDV LGEQYPSSLD SPRSYVNLES PDSIFLASGS  180
NCGDNTSKST SAGTTSGAID SAKETQWVGG DVAGGNPSFS RTPLPDDNHI QSNFQPNVQF  240
TGNPSNGFTD AGDGLMGSSA GEMVQNMFSD AESVLQFKRG LEEASKFLPI ASQLVIDLET  300
NAVSSRQNED APIVVVKEEN SERDSSPDGS RGRKNHERED PDLEEGRRNK QSAVHVEESE  360
LSEMFDKVLL WTGGHCCGDD AVQDVASRNS QPDEQSNGSR GGKTRAKRQN KKKETVDLRT  420
LLILCAQAVS ANDFRTANEL LKQIRQHSSQ FGDGTQRLAH FFANGLEARL AGSGDGTRSF  480
FTHLASKRTT AADMLKAYKT NLQACPFKKL SIFFAISMIL QAAEKATTLH IVDFGVLYGF  540
QWPILIQQLS LFPNGPPKLR LTGIELPQHG FRPSERIEET GRRLAKYCER FKVPFEYNPI  600
AAQNWERIPI EDLKINGNEV LAVNCQCRFK NLFDETVEVD CPKNAILNLI RKMNPDIFVH  660
TIMNGSYNAP FFLTRFREAL FHFSSLFDMF DSTLPREDQA RIMFEGELYG RDAMNVVACE  720
GQERVERPET YKQWQARTLR AGFKTLPLDQ KLMTKFRGKL KTYYHKDFVI DEDSDWMLQG  780
WKGRIIYASS CWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-464017941379Protein SCARECROW
5b3h_D4e-464017941379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035288.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_011035289.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K2C2W00.0A0A2K2C2W0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]