PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022584.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 778aa    MW: 88590.3 Da    PI: 5.1507
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022584.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.81.7e-993086582354
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL++ Aeav+ +d++ a++lL++++++++p gd  qRla++f++AL++r+a+++se+y++l++++ +    +  l+a +lf   +P++ +s+l a 
  CCG022584.1 308 RTLLIHSAEAVAVNDHRTANELLTQIRQNSTPFGDGSQRLAHCFANALETRIAGTGSEVYATLAAKRVT---PACILKAGRLFISGCPFMIMSNLFAA 402
                  789************************************************************999998...79999********************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  + I++ +e+++r+Hii f+i +G+ Wp+L+q L++Rp+gpp lR+Tg++ +++g  s+  le +g+ La+++e+++vpf++n+ +++++e+l+le+L+
  CCG022584.1 403 RIIMDLAENATRLHIIHFGILYGFPWPSLIQHLSTRPGGPPVLRVTGIEFSQTGyeSAAVLEDIGRYLASYCEKFNVPFNYNA-ISQKWENLQLEDLK 499
                  **************************************************9999999**************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E+++V++ ++ ++llde+vsl+ +rd+vL+l+k+++P ++++   +  +ns+ F+ rf eal yys+lfd+lea+ +re+ er++ E+e++g+e
  CCG022584.1 500 IDRDEVTVVSSLYRFQHLLDETVSLNCQRDAVLNLIKRINPAIFIHGIINGAYNSPFFVSRFREALFYYSSLFDMLEANTSREDPERMVFEQEVFGKE 597
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                  i nv++ceg +r er e++++W++r  ++G++++pl+e ++kq++  ++  + + + ++++
  CCG022584.1 598 ILNVISCEGWDRLERPEKYKQWQARKVRSGLRQLPLKEGIMKQVREQVKSSYHKDFLMDQD 658
                  ************************************************9999777877765 PP
2GRAS82.48e-26670776268374
         GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                  f  +ea+ +re+ er++ E+e++g+ei nv++ceg +r er e++++W++r  ++G++++pl+e ++kq++  ++  + + + ++++ +++++gWk+r
  CCG022584.1 670 FRGVEANTSREDPERMVFEQEVFGKEILNVISCEGWDRLERPEKYKQWQARKVRSGLRQLPLKEGIMKQVREQVKSSYHKDFLMDQDGQWMLQGWKGR 767
                  55689999**********************************************************************888***************** PP

         GRAS 366 pLvsvSaWr 374
                   L+++S+W+
  CCG022584.1 768 ILFAISCWK 776
                  ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.629281658IPR005202Transcription factor GRAS
PfamPF035146.0E-97308658IPR005202Transcription factor GRAS
PROSITE profilePS5098510.536670756IPR005202Transcription factor GRAS
PfamPF035142.8E-23670776IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MNPVFEDPAA NAVLKYISQI LMEEESEEQT FISRDFSLWA AEILMEEESE EQTFSSRDFS  60
LWAAERPFSD ILAPKGSSSD GEVSDPSQTI NNVSTYCCDV YGCNSSMKAN NIVESSSICD  120
GGPPPVNYTV PFSLQVNPPP FFPRSGFQTF PGPLDSVNVA LNERQLEVLF RGGTDETWKF  180
HQQPKEMVVD FANNRMTPVM AITKESNLDH SVCELMERQN HYRVETELEP RINKHTSICA  240
EEPEQFGMFA RVFPSTGGDG EPAGFNLNEA FQSGPGMISY LKEQSRGSND GVICRKSQVS  300
SRELVDMRTL LIHSAEAVAV NDHRTANELL TQIRQNSTPF GDGSQRLAHC FANALETRIA  360
GTGSEVYATL AAKRVTPACI LKAGRLFISG CPFMIMSNLF AARIIMDLAE NATRLHIIHF  420
GILYGFPWPS LIQHLSTRPG GPPVLRVTGI EFSQTGYESA AVLEDIGRYL ASYCEKFNVP  480
FNYNAISQKW ENLQLEDLKI DRDEVTVVSS LYRFQHLLDE TVSLNCQRDA VLNLIKRINP  540
AIFIHGIING AYNSPFFVSR FREALFYYSS LFDMLEANTS REDPERMVFE QEVFGKEILN  600
VISCEGWDRL ERPEKYKQWQ ARKVRSGLRQ LPLKEGIMKQ VREQVKSSYH KDFLMDQDGQ  660
YANEECNIKF RGVEANTSRE DPERMVFEQE VFGKEILNVI SCEGWDRLER PEKYKQWQAR  720
KVRSGLRQLP LKEGIMKQVR EQVKSSYHKD FLMDQDGQWM LQGWKGRILF AISCWKSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4131563327334Protein SCARECROW
5b3h_A1e-4131563326333Protein SCARECROW
5b3h_D1e-4131563326333Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2725010.0GU272501.1 Populus balsamifera isolate FRE01 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725020.0GU272502.1 Populus balsamifera isolate FRE01 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725030.0GU272503.1 Populus balsamifera isolate GAL12 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725040.0GU272504.1 Populus balsamifera isolate GAL12 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725050.0GU272505.1 Populus balsamifera isolate GIL14 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725060.0GU272506.1 Populus balsamifera isolate GIL14 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725070.0GU272507.1 Populus balsamifera isolate GPR02 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725080.0GU272508.1 Populus balsamifera isolate GPR02 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725090.0GU272509.1 Populus balsamifera isolate INU03 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725100.0GU272510.1 Populus balsamifera isolate INU03 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725110.0GU272511.1 Populus balsamifera isolate KUU07 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725120.0GU272512.1 Populus balsamifera isolate KUU07 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725130.0GU272513.1 Populus balsamifera isolate MGR10 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725140.0GU272514.1 Populus balsamifera isolate MGR10 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725150.0GU272515.1 Populus balsamifera isolate POR11 haplotype A scarecrow-like transcription factor 9 gene, partial sequence.
GenBankGU2725160.0GU272516.1 Populus balsamifera isolate POR11 haplotype B scarecrow-like transcription factor 9 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035336.10.0PREDICTED: scarecrow-like protein 33
TrEMBLB9GJL80.0B9GJL8_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-152SCARECROW-like 14