PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022583.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 657aa MW: 74805.7 Da PI: 7.9323

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022583.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	358.3	1.1e-109	283	653	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ cA+a gdl+ a+ L+++++++sp gd++qRla+yf+++L+arla+++ l+ ++ s+t+ ++ l++++l++ v+P+ k+++l aN+ CCG022583.1 283 TLLILCAQAAGIGDLKTASGKLKQIRQHSSPLGDANQRLAHYFANGLEARLAGTGMPLSGPITQSSTT---AADILKSYELYVTVCPFRKMTNLCANR 377 689************************************************888888666555555...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +I + v++++ vHiiDf+is+G+QWp+++ + Rp+ p ++R+Tg++ p++g +e++eetg+rL+++A++++vpfe+n+ +a+++e++++e+L++ CCG022583.1 378 TISRVVDKATSVHIIDFGISYGFQWPCFIYRQSLRPGRPTKIRVTGIELPQPGfrPAERVEETGRRLQRLADRMKVPFEYNA-IAQKWETIQYEDLKI 474 ************************************************9*************************.7********** PP GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++ +E+++Vn++++l++l+d+++ ++s+rd+vLkl+k+++P+++ + ++ ++n++ F++rf eal +ysa+fd+lea++pre++er Ere +gr CCG022583.1 475 DRdrDEVIIVNCMYRLKNLPDDTMVVNSPRDAVLKLIKRINPDIFLHGVSNGSYNAPFFVTRFREALFHYSAFFDMLEATAPREDQERLLFEREKIGR 572 9999****************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ nv+aceg++r+er e +++W++r + GF++vpl +++ +k + + +++d + v+e+ ++++lgWk++ + ++SaW+ CCG022583.1 573 DAINVIACEGTQRVERPEPYKQWHMRNLRIGFRQVPLHQSIIRRVKNIKHDYHKD-FIVDEDGQWILLGWKGKIIHAISAWK 653 *************************************************77.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.385	255	634	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-107	283	653	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence Send to blast
MVIESMDPPS YPTNLQAPAN NPSLRSTSDG ESPFDSETTD CYHAVLKYIH DILMEDGLGD 60 KTCMLQDSLA LQAAEKSLYD VIGEEYPSSS DHCPPCLIHN NERPDENFTP TTSVQSSVTQ 120 PFDSPESMPY VHVETQPFGQ FNGVMGSANK SIPYSHSIKF SSMGNVSDPQ ELKREVMADR 180 MQKNGRNYSS IQTRGRRNHQ HDNNGYLEEG RSKKQSSVSE SLHLELLDDT FLYNIENGGH 240 IPCPLYGNSP SARNKKFLQS EQSVASDMRR RTLANKRETD LWTLLILCAQ AAGIGDLKTA 300 SGKLKQIRQH SSPLGDANQR LAHYFANGLE ARLAGTGMPL SGPITQSSTT AADILKSYEL 360 YVTVCPFRKM TNLCANRTIS RVVDKATSVH IIDFGISYGF QWPCFIYRQS LRPGRPTKIR 420 VTGIELPQPG FRPAERVEET GRRLQRLADR MKVPFEYNAI AQKWETIQYE DLKIDRDRDE 480 VIIVNCMYRL KNLPDDTMVV NSPRDAVLKL IKRINPDIFL HGVSNGSYNA PFFVTRFREA 540 LFHYSAFFDM LEATAPREDQ ERLLFEREKI GRDAINVIAC EGTQRVERPE PYKQWHMRNL 600 RIGFRQVPLH QSIIRRVKNI KHDYHKDFIV DEDGQWILLG WKGKIIHAIS AWKPVQK

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence Send to blast

MVIESMDPPS YPTNLQAPAN NPSLRSTSDG ESPFDSETTD CYHAVLKYIH DILMEDGLGD  60
KTCMLQDSLA LQAAEKSLYD VIGEEYPSSS DHCPPCLIHN NERPDENFTP TTSVQSSVTQ  120
PFDSPESMPY VHVETQPFGQ FNGVMGSANK SIPYSHSIKF SSMGNVSDPQ ELKREVMADR  180
MQKNGRNYSS IQTRGRRNHQ HDNNGYLEEG RSKKQSSVSE SLHLELLDDT FLYNIENGGH  240
IPCPLYGNSP SARNKKFLQS EQSVASDMRR RTLANKRETD LWTLLILCAQ AAGIGDLKTA  300
SGKLKQIRQH SSPLGDANQR LAHYFANGLE ARLAGTGMPL SGPITQSSTT AADILKSYEL  360
YVTVCPFRKM TNLCANRTIS RVVDKATSVH IIDFGISYGF QWPCFIYRQS LRPGRPTKIR  420
VTGIELPQPG FRPAERVEET GRRLQRLADR MKVPFEYNAI AQKWETIQYE DLKIDRDRDE  480
VIIVNCMYRL KNLPDDTMVV NSPRDAVLKL IKRINPDIFL HGVSNGSYNA PFFVTRFREA  540
LFHYSAFFDM LEATAPREDQ ERLLFEREKI GRDAINVIAC EGTQRVERPE PYKQWHMRNL  600
RIGFRQVPLH QSIIRRVKNI KHDYHKDFIV DEDGQWILLG WKGKIIHAIS AWKPVQK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-46	285	653	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035287.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	B9GJL7	0.0	B9GJL7_POPTR; Uncharacterized protein
STRING	POPTR_0001s24880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-164	SCARECROW-like 14