PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022582.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 711aa MW: 80621 Da PI: 5.9311

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022582.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	372.7	4.9e-114	337	707	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL++cA+av+ gd++ a++lL+++++++sp gd++qRla+yf++AL +rla+ ++ a++p ++++++ +e+l+a+++++ ++P+ ++s++ aN CCG022582.1 337 SSLLTQCAQAVAIGDQRTASELLKQIRQHSSPFGDANQRLAHYFANALDTRLAG---TMTPAFAPVASHRTSAAESLKAYQVYVRACPFKRMSNFFAN 431 689*************************************************...666666777777777********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 ++Il+ +++++r+HiiDf+i +G+QWp+L+q L++R++gpp+lRiTg++ p+++ +e++eetg+rL+k++e+++vpfe+++ +a+++e++++e+Lr CCG022582.1 432 RTILKLAKKATRLHIIDFGILYGFQWPCLIQRLSERAGGPPRLRITGIELPQPDfrPTERVEETGRRLEKYCERFKVPFEYDA-IAQKWETIRYEDLR 528 **************************************************99*************************.7********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++E+++Vn+ ++l +l+d++v +s+rd+vLkl+++++P+++++ + n++ F++rf eal++ys+lfd++ea+++re+e+r+ E+e gre CCG022582.1 529 IDKDEMIVVNSLYRLRNLPDDTVVENSARDAVLKLINKIKPDMFIHGVVNGAFNAPYFVTRFREALYHYSSLFDMFEANVSREDENRMLFEKERYGRE 626 ********************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i nv+aceg++r+er et+++W++r ++GF++++l+ + k+++++++ + + + v+ + +++++gWk+r + ++S+W+ CCG022582.1 627 IINVIACEGTSRVERPETYKQWQSRNLRVGFRQLTLDPELFKDVRSVVKSEYHKDFVVDADGQWMLQGWKGRIMHALSVWE 707 **********************************************99888***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.068	310	687	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-111	337	707	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MNNHFQEYPN SMNRFVFDHA SVSFSPNRDL VNGYKLNDTL RSPNPSFNYF NPESPSESTS 60 SSSSSNSCSE VYGPSNNVTL KFISDVLLEE DLEGKTCMLQ DCLALQAAEK PFYDVLGQEY 120 PHSSNQILSC FNQNVESPND GATWINNTGS TNGYHTANNL VEKSDWIFDQ ADLELSQVPQ 180 SSPVFSLEKT PLGTDFQSPA HAYEMLSKGE EEAGNSLSTS DYLMSSPERS SSNPPDKEER 240 GYSPNSSRGR KNHQREDGDA LEEERGKKHS ALSPAESEQS ELFDEVLLCS GAQNVSASCA 300 LLDKSQNGAG RNEQRKGSNG RAARAKRKEN KEVVDLSSLL TQCAQAVAIG DQRTASELLK 360 QIRQHSSPFG DANQRLAHYF ANALDTRLAG TMTPAFAPVA SHRTSAAESL KAYQVYVRAC 420 PFKRMSNFFA NRTILKLAKK ATRLHIIDFG ILYGFQWPCL IQRLSERAGG PPRLRITGIE 480 LPQPDFRPTE RVEETGRRLE KYCERFKVPF EYDAIAQKWE TIRYEDLRID KDEMIVVNSL 540 YRLRNLPDDT VVENSARDAV LKLINKIKPD MFIHGVVNGA FNAPYFVTRF REALYHYSSL 600 FDMFEANVSR EDENRMLFEK ERYGREIINV IACEGTSRVE RPETYKQWQS RNLRVGFRQL 660 TLDPELFKDV RSVVKSEYHK DFVVDADGQW MLQGWKGRIM HALSVWEPVQ E

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MNNHFQEYPN SMNRFVFDHA SVSFSPNRDL VNGYKLNDTL RSPNPSFNYF NPESPSESTS  60
SSSSSNSCSE VYGPSNNVTL KFISDVLLEE DLEGKTCMLQ DCLALQAAEK PFYDVLGQEY  120
PHSSNQILSC FNQNVESPND GATWINNTGS TNGYHTANNL VEKSDWIFDQ ADLELSQVPQ  180
SSPVFSLEKT PLGTDFQSPA HAYEMLSKGE EEAGNSLSTS DYLMSSPERS SSNPPDKEER  240
GYSPNSSRGR KNHQREDGDA LEEERGKKHS ALSPAESEQS ELFDEVLLCS GAQNVSASCA  300
LLDKSQNGAG RNEQRKGSNG RAARAKRKEN KEVVDLSSLL TQCAQAVAIG DQRTASELLK  360
QIRQHSSPFG DANQRLAHYF ANALDTRLAG TMTPAFAPVA SHRTSAAESL KAYQVYVRAC  420
PFKRMSNFFA NRTILKLAKK ATRLHIIDFG ILYGFQWPCL IQRLSERAGG PPRLRITGIE  480
LPQPDFRPTE RVEETGRRLE KYCERFKVPF EYDAIAQKWE TIRYEDLRID KDEMIVVNSL  540
YRLRNLPDDT VVENSARDAV LKLINKIKPD MFIHGVVNGA FNAPYFVTRF REALYHYSSL  600
FDMFEANVSR EDENRMLFEK ERYGREIINV IACEGTSRVE RPETYKQWQS RNLRVGFRQL  660
TLDPELFKDV RSVVKSEYHK DFVVDADGQW MLQGWKGRIM HALSVWEPVQ E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-49	326	708	8	379	Protein SCARECROW
5b3h_D	1e-49	326	708	8	379	Protein SCARECROW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU230854	0.0	CU230854.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035286.1	0.0	PREDICTED: scarecrow-like protein 30
TrEMBL	A0A385JHP5	0.0	A0A385JHP5_POPTO; SCARECROW-like 14
TrEMBL	B9GJL6	0.0	B9GJL6_POPTR; Uncharacterized protein
STRING	POPTR_0001s24890.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	0.0	GRAS family protein