PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 132aa MW: 15305.8 Da PI: 7.7759 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.2 | 3.8e-10 | 7 | 96 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+l ++ + ++ l+lp + ++++ +g + d + ++W++ l+ +s+ ++l++ W +Fv+++gL D vvF +++++ CCG022490.1 7 FTKKL-KPTHISH-ALSLPTHALDAFpipEGA--HMMNFDAVDATDNVWRFCLSTrltGAYSKPVLLRSSWHRFVEQKGLAPEDRVVFFMQRDE 96 66777.4444555.4********999554333..345566778999*******77675666666********************9999866654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.34E-11 | 3 | 100 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-12 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.13E-9 | 5 | 96 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MEQLHIFTKK LKPTHISHAL SLPTHALDAF PIPEGAHMMN FDAVDATDNV WRFCLSTRLT 60 GAYSKPVLLR SSWHRFVEQK GLAPEDRVVF FMQRDEANDM IRRYTVRAQR KVMILMGQDI 120 WVDVEDLPLQ GL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216593 | 0.0 | AC216593.1 Populus trichocarpa clone POP016-L16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007872.1 | 9e-96 | PREDICTED: uncharacterized protein LOC105113407 | ||||
TrEMBL | A0A3N7H3I5 | 6e-83 | A0A3N7H3I5_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_027512m | 2e-48 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13907 | 2 | 9 |