PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022423.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 536aa    MW: 59715.6 Da    PI: 6.2393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022423.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.33.7e-1391665361374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L++cA+avs++dl +aq l+ +l++++s +g+p+qRl ay++e+L arla+s+s+++kal+++e +   sse l+++++++ev+ ++kf+++ a
  CCG022423.1 166 LKQVLIACAKAVSDNDLLMAQCLMDKLRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSICKALRCKEPA---SSEMLSYMHILYEVCAYFKFGYMSA 260
                  5799*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a +  ++++e+L
  CCG022423.1 261 NGAIAEALKDENRVHIIDFQIGQGSQWISLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLSIVGKRLSKLAESFKVPFEFHA-AAMSGCEVRIENL 357
                  ***************************************************998899999************************.89999******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                   v++gEalaVn+++ lh+++desvs++++rd+vL+lvkslsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr+++eri+vE+++l+r
  CCG022423.1 358 GVRRGEALAVNFAFVLHHMPDESVSTQNHRDRVLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYTAMFESIDVTLPRDHKERINVEQHCLAR 455
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++vn++aceg+er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll++++++ yr++e++g+l+lgW++r Lv+ +aW+
  CCG022423.1 456 DVVNIIACEGTERVERHELLGKWRSRFTMAGFTPYPLSTLVNATIKTLLENYSDR-YRLQERDGALYLGWMNRDLVASCAWK 536
                  *****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.861140517IPR005202Transcription factor GRAS
PfamPF035141.3E-136166536IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSSRFLYQPM QEVEAYCKPQ SRTLDRQIYS SGSTQGTPFT IPNSHEHYCT LESSSANGSY  60
AAYNSPSTVS FSPNGSPLSQ QESQSYSLEP RHSPDNASGS PLSGSCITDD AHDFRHKLRE  120
LETVMFGPDS DIIDSIENAL ESGTNIESLE MDSWRQIMDV ISRGDLKQVL IACAKAVSDN  180
DLLMAQCLMD KLRQMVSVSG EPIQRLGAYM LEGLVARLAS SGSSICKALR CKEPASSEML  240
SYMHILYEVC AYFKFGYMSA NGAIAEALKD ENRVHIIDFQ IGQGSQWISL IQAFAARPGG  300
PPHIRITGID DSTSAYARGG GLSIVGKRLS KLAESFKVPF EFHAAAMSGC EVRIENLGVR  360
RGEALAVNFA FVLHHMPDES VSTQNHRDRV LRLVKSLSPK VVTLVEQESN TNTAAFFPRF  420
LETLNYYTAM FESIDVTLPR DHKERINVEQ HCLARDVVNI IACEGTERVE RHELLGKWRS  480
RFTMAGFTPY PLSTLVNATI KTLLENYSDR YRLQERDGAL YLGWMNRDLV ASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6117353526378Protein SCARECROW
5b3h_A3e-6117353525377Protein SCARECROW
5b3h_D3e-6117353525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048955.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_011048956.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2K1XWW20.0A0A2K1XWW2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]